Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 0.0e+00 1092.8 576 100.0
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 3.7e-300 1034.2 575 94.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.5e-298 1028.9 578 93.6
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 7.6e-298 1026.5 578 93.3
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.9e-297 1024.6 581 90.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 8.7e-294 1013.1 574 90.2
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.3e-268 929.5 567 84.8
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.1e-267 926.4 538 87.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 5.9e-266 920.6 573 81.0
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.5e-265 916.8 528 86.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.2e-263 912.9 572 81.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.1e-263 912.1 571 80.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 8.0e-263 910.2 533 85.6
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.4e-262 909.4 533 85.2
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.8e-262 909.1 532 84.8
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 3.0e-262 908.3 534 84.3
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 5.2e-262 907.5 539 84.4
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 6.7e-262 907.1 533 85.4
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 9.7e-261 903.3 536 84.3
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 9.7e-261 903.3 565 80.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.3e-260 902.9 524 86.8
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.2e-260 902.1 578 80.4
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.2e-260 902.1 576 79.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.7e-260 901.4 576 79.3
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 3.7e-260 901.4 569 80.5
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 8.2e-260 900.2 555 81.6
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.4e-259 899.4 530 84.9
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.4e-259 899.4 534 84.5
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.8e-259 899.0 531 84.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.1e-259 897.9 526 85.9
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.1e-259 897.9 539 83.3
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 9.1e-259 896.7 533 83.9
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.6e-258 895.2 534 83.1
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 4.5e-258 894.4 532 83.8
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 5.9e-258 894.0 517 85.5
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.3e-257 892.9 534 82.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.3e-257 892.9 524 85.1
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 6.5e-257 890.6 524 84.9
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 8.5e-257 890.2 514 85.6
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 8.5e-257 890.2 520 85.6
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.5e-256 889.4 531 84.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.9e-256 889.0 533 83.1
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 2.5e-256 888.6 526 84.8
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 3.2e-256 888.3 534 83.3
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 5.5e-256 887.5 524 84.7
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 7.2e-256 887.1 531 83.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 7.2e-256 887.1 517 84.9
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 9.4e-256 886.7 572 80.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 4.7e-255 884.4 530 83.8
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.7e-255 884.4 534 82.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 6.1e-255 884.0 527 83.1
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-254 882.9 538 83.3
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.4e-254 882.9 529 83.4
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.4e-254 882.9 529 83.4
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-254 882.5 538 83.1
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.3e-254 882.1 546 81.9
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.3e-254 882.1 519 84.2
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 3.0e-254 881.7 529 83.4
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 3.0e-254 881.7 529 83.4
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 3.0e-254 881.7 529 83.4
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.0e-254 881.7 529 83.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 4.0e-254 881.3 530 83.6
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 4.0e-254 881.3 535 83.0
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 8.8e-254 880.2 530 83.2
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.6e-253 878.6 530 83.2
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.3e-253 878.2 530 82.8
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 7.5e-253 877.1 529 83.2
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.7e-253 876.7 580 78.3
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.7e-252 875.9 571 78.1
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.8e-252 875.2 570 78.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 3.7e-252 874.8 517 84.3
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 8.2e-252 873.6 541 82.1
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 8.2e-252 873.6 559 78.5
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-251 872.8 536 81.5
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.4e-251 872.8 547 81.0
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.3e-251 870.9 538 81.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.3e-251 870.9 536 81.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 5.9e-250 867.5 530 82.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 7.7e-250 867.1 543 80.8
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.1e-248 863.2 535 81.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.5e-248 862.1 517 82.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 3.2e-248 861.7 536 80.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.2e-248 861.7 546 80.0
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 4.2e-248 861.3 510 84.1
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 4.2e-248 861.3 525 81.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.2e-248 860.5 548 79.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.1e-247 859.0 535 80.2
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 2.1e-247 859.0 519 82.1
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 4.7e-247 857.8 567 77.8
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 5.2e-246 854.4 533 81.1
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.7e-244 848.2 557 77.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-243 846.3 534 80.1
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.1e-243 844.7 535 79.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 2.7e-242 842.0 527 80.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.6e-241 837.0 494 83.8
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.1e-240 836.6 544 77.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.8e-238 829.3 534 78.7
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.7e-237 824.3 535 79.3
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.1e-235 820.1 525 77.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 5.4e-235 817.8 474 86.7
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 6.6e-233 810.8 470 86.4
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 4.3e-232 808.1 490 82.9
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.1e-227 793.5 580 74.7
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 8.6e-225 783.9 542 72.0
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.2e-223 780.0 462 85.5
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.6e-223 778.5 570 72.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 4.9e-220 768.1 492 76.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 1.3e-217 760.0 491 74.9
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 7.3e-216 754.2 493 76.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.1e-215 752.7 538 70.3
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.5e-208 729.2 415 85.3
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.7e-207 724.9 503 75.7
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 8.9e-206 720.7 416 84.6
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 8.9e-206 720.7 423 85.6
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 7.1e-203 711.1 511 69.5
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.5e-202 708.8 520 70.6
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.9e-195 686.4 496 68.5
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 4.6e-194 681.8 529 68.2
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 6.4e-188 661.4 503 63.6
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 7.9e-186 654.4 460 71.1
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.3e-184 648.7 536 66.6
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.1e-183 646.4 515 63.9
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 2.2e-167 593.2 318 91.2
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.4e-163 580.5 531 60.5
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.8e-161 571.2 502 61.8
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.3e-160 568.9 524 58.6
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.4e-160 568.2 402 69.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.5e-157 558.9 356 80.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.8e-153 547.0 495 58.8
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-153 547.0 494 58.9
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-153 546.6 495 58.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.0e-137 494.6 331 72.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.8e-129 467.2 492 52.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.8e-126 457.2 500 48.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 2.3e-116 423.7 575 47.3
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.2e-104 384.8 556 40.5
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-97 360.5 435 49.0
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 4.4e-88 329.7 445 40.4
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-86 325.1 346 55.2
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.4e-70 270.8 175 73.7
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.3e-68 264.2 171 78.9
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.5e-67 260.8 529 37.6
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.1e-61 241.1 256 52.0
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.0e-52 212.2 414 37.2
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.0e-48 198.0 476 34.0
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.4e-48 197.2 129 75.2
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.7e-42 177.2 105 81.9
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 6.9e-41 172.9 106 85.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.0e-39 169.1 119 76.5
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 4.2e-30 137.1 79 84.8
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.5e-30 136.7 113 59.3
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.7e-29 134.4 124 65.3
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-27 128.6 88 77.3
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 2.1e-21 108.2 65 86.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 2.3e-20 104.8 89 61.8
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.1e-17 95.9 71 73.2
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 7.0e-17 93.2 70 54.3
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-16 91.3 54 83.3
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 2.2e-15 88.2 50 86.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 3.8e-15 87.4 56 76.8
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 2.7e-13 81.3 53 75.5
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 6.8e-12 76.6 98 50.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-11 75.5 49 75.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 3.7e-10 70.9 43 79.1
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 7.0e-09 66.6 57 57.9
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.0e-08 65.1 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 7.7e-08 63.2 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.9e-07 61.2 44 61.4


User provided reference genes

Program Settings