Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-178 629.8 317 100.0
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.4e-175 618.2 317 98.7
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-164 582.0 317 93.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.4e-160 568.9 317 89.6
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 2.4e-160 568.9 317 89.9
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 3.5e-159 565.1 318 88.7
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-157 560.1 316 90.8
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.9e-157 559.3 317 87.7
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.3e-153 546.6 317 86.8
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 7.7e-151 537.3 315 85.4
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 9.4e-149 530.4 279 96.1
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 6.3e-145 517.7 329 81.2
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 9.1e-144 513.8 317 81.4
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.2e-142 509.2 319 80.6
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 2.9e-142 508.8 300 84.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 3.2e-141 505.4 319 80.3
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.2e-140 503.4 303 83.2
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.2e-140 503.4 303 83.2
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.0e-139 500.4 319 79.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 1.4e-139 500.0 300 82.0
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 1.8e-139 499.6 318 78.9
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.3e-139 499.2 319 79.3
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 2.3e-139 499.2 317 78.5
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 3.0e-139 498.8 300 82.7
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 3.0e-139 498.8 303 82.2
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 4.0e-139 498.4 323 79.3
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.5e-138 496.5 300 81.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.6e-138 495.7 328 77.1
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 4.4e-138 495.0 316 82.0
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 5.7e-138 494.6 300 82.0
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 5.7e-138 494.6 317 79.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 2.2e-137 492.7 310 80.0
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.8e-137 492.3 317 78.9
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.8e-137 492.3 308 80.8
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 1.1e-136 490.3 300 82.3
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.8e-136 489.6 317 77.3
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 2.4e-136 489.2 317 77.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 3.1e-136 488.8 317 78.9
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 5.4e-136 488.0 316 78.5
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.6e-135 486.5 346 72.8
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.6e-135 486.5 310 79.0
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 2.7e-135 485.7 317 78.9
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 3.5e-135 485.3 317 77.9
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 7.7e-135 484.2 317 77.9
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 1.3e-134 483.4 317 76.7
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.9e-134 482.3 283 84.1
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.8e-134 481.9 317 77.6
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.8e-134 481.9 351 72.4
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.9e-133 479.6 320 75.6
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 3.3e-133 478.8 291 81.4
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.2e-132 476.9 317 75.4
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.6e-132 476.5 317 75.4
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.1e-132 476.1 300 78.3
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 2.8e-132 475.7 308 76.6
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 8.0e-132 474.2 317 76.0
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.0e-131 473.8 283 82.3
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.0e-131 473.8 316 75.6
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.0e-131 473.8 317 75.1
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.0e-131 473.8 320 75.3
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 1.0e-131 473.8 300 78.3
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 3.0e-131 472.2 318 74.5
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 1.2e-130 470.3 307 76.2
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 2.0e-130 469.5 317 73.8
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 2.0e-130 469.5 369 68.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.4e-130 468.4 308 75.6
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 1.7e-129 466.5 316 73.1
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.7e-129 465.3 337 71.8
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 4.9e-129 464.9 301 76.4
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 6.4e-129 464.5 311 73.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 6.4e-129 464.5 374 66.6
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 6.4e-129 464.5 306 75.2
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 1.1e-128 463.8 339 70.8
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.8e-128 463.0 317 75.4
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 2.4e-128 462.6 300 74.7
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.0e-127 459.5 306 75.5
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.7e-127 459.1 304 74.7
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 3.5e-127 458.8 300 78.0
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 3.5e-127 458.8 308 72.7
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.3e-126 456.1 304 74.0
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 8.6e-126 454.1 304 74.0
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 7.3e-125 451.1 300 73.7
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.6e-124 449.9 251 89.6
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 2.1e-124 449.5 305 75.4
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 3.6e-124 448.7 308 73.4
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-124 448.4 286 79.7
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-123 446.8 250 90.4
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 8.9e-123 444.1 300 71.3
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.4e-122 442.2 315 71.1
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 1.3e-121 440.3 315 70.8
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 1.7e-121 439.9 297 72.1
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 4.1e-120 435.3 283 76.7
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 9.2e-120 434.1 299 70.2
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.0e-119 433.0 311 74.3
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 6.0e-119 431.4 345 67.0
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 5.0e-118 428.3 250 85.2
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 8.6e-118 427.6 345 67.0
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 2.5e-117 426.0 299 69.6
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 9.5e-117 424.1 300 69.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 9.5e-117 424.1 300 69.7
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 6.2e-116 421.4 300 69.3
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 6.2e-116 421.4 300 69.3
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 8.1e-116 421.0 300 68.7
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 1.4e-115 420.2 300 69.0
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.4e-115 420.2 299 68.6
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.1e-115 419.1 299 68.9
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 5.2e-115 418.3 300 67.7
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 3.4e-114 415.6 299 67.9
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 9.8e-114 414.1 301 65.1
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.5e-111 405.6 313 70.0
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 6.0e-111 404.8 300 67.3
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 5.1e-110 401.7 300 70.3
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 5.2e-107 391.7 250 77.6
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 2.8e-100 369.4 226 86.3
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.0e-94 350.9 302 57.0
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 9.6e-93 344.4 228 76.3
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 3.4e-90 335.9 191 89.5
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 8.4e-89 331.3 206 79.6
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 7.1e-88 328.2 222 77.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 6.4e-81 305.1 317 55.8
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 7.6e-74 281.6 335 46.0
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 7.9e-71 271.6 186 72.6
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.0e-70 271.2 208 66.8
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 4.3e-61 239.2 142 88.7
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.1e-59 234.6 273 49.1
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.0e-58 230.3 167 73.1
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 7.7e-58 228.4 178 70.8
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 3.3e-53 213.0 390 35.6
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-45 188.0 170 58.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.2e-44 183.7 117 73.5
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.0e-41 174.9 112 79.5
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-40 169.5 91 92.3
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 8.0e-39 165.2 100 81.0
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-36 157.1 79 96.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-29 133.7 176 47.2
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.8e-22 110.9 67 79.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-21 107.5 77 72.7
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 2.8e-20 103.6 85 64.7
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-13 81.6 57 68.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 9.8e-13 78.6 53 77.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 6.4e-12 75.9 81 50.6
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 7.3e-08 62.4 39 66.7


User provided reference genes

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