Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 4.0e-182 641.3 331 100.0
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 4.9e-156 554.7 332 88.0
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 6.0e-154 547.7 332 85.8
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 7.8e-154 547.4 332 86.1
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.7e-153 546.2 332 85.5
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.6e-153 543.9 332 85.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.9e-148 528.9 330 83.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.7e-145 519.6 331 81.3
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.4e-115 420.2 335 67.5
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 2.1e-111 406.4 333 65.8
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.2e-109 400.6 336 66.1
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.2e-109 400.6 334 64.7
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.2e-109 400.6 336 65.2
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.6e-109 399.4 335 64.8
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 7.6e-109 397.9 334 65.0
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.1e-107 394.0 332 64.8
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 9.3e-107 391.0 335 62.1
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.1e-106 389.8 330 64.5
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.1e-104 384.0 339 64.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.8e-103 379.4 336 60.1
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 3.7e-103 379.0 336 61.0
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 8.2e-103 377.9 336 61.6
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 8.2e-103 377.9 335 61.2
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.4e-102 376.3 334 62.0
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 3.1e-102 375.9 332 62.7
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 4.1e-102 375.6 334 59.9
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.1e-102 375.6 336 60.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 5.3e-102 375.2 336 61.9
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 3.4e-101 372.5 337 62.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 5.9e-101 371.7 331 61.6
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 1.0e-100 370.9 335 59.7
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.0e-100 370.9 335 60.0
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.3e-100 370.5 329 61.7
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.3e-100 370.5 335 60.6
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.2e-100 369.8 337 61.7
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.9e-99 366.7 336 61.9
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 3.2e-99 365.9 336 58.3
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 5.5e-99 365.2 341 60.1
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 2.1e-98 363.2 336 59.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.5e-98 362.5 388 52.6
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 6.1e-98 361.7 340 58.5
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 3.0e-97 359.4 335 60.0
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 5.1e-97 358.6 335 59.7
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-96 357.5 336 60.7
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-96 356.3 339 58.7
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 4.3e-96 355.5 328 61.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.8e-95 352.8 335 59.7
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.8e-95 352.8 335 57.6
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.8e-95 352.1 335 59.7
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.1e-94 350.9 362 57.2
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 1.8e-94 350.1 335 58.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.4e-94 349.7 338 57.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.1e-94 349.0 336 58.0
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.9e-94 348.2 331 57.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.9e-94 348.2 335 59.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.0e-94 347.8 339 58.1
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.5e-93 347.1 335 57.9
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 1.5e-93 347.1 324 57.4
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.5e-93 347.1 343 58.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.0e-93 346.7 335 57.6
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.6e-93 346.3 336 57.7
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 2.6e-93 346.3 340 56.8
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.5e-93 345.5 324 57.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.3e-92 344.0 279 64.5
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 3.8e-92 342.4 340 57.4
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.0e-92 342.0 335 58.2
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.0e-92 342.0 324 57.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 6.5e-92 341.7 339 58.1
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 6.5e-92 341.7 280 65.0
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 8.5e-92 341.3 348 57.2
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 8.5e-92 341.3 324 59.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 4.2e-91 339.0 337 56.4
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.6e-90 337.0 344 57.6
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 3.6e-90 335.9 340 58.2
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.4e-89 334.0 339 56.0
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 1.8e-89 333.6 340 55.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 1.8e-89 333.6 344 56.1
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-89 332.8 335 56.1
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.0e-89 332.8 277 62.8
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.0e-89 332.8 340 57.4
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.1e-89 332.0 324 56.8
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.5e-88 330.5 341 54.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.0e-88 330.1 342 55.8
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.5e-88 329.7 334 55.1
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.3e-88 329.3 341 54.0
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.4e-88 328.2 341 53.7
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 7.4e-88 328.2 345 54.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 8.2e-87 324.7 364 52.7
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.0e-85 320.1 334 56.0
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-83 314.3 353 53.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 4.2e-83 312.4 335 54.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 7.2e-83 311.6 306 56.2
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 7.2e-83 311.6 323 57.3
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 9.4e-83 311.2 345 51.0
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.7e-82 309.7 334 53.3
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 6.1e-82 308.5 323 57.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 8.8e-81 304.7 343 53.6
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.0e-80 303.5 248 69.0
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 1.3e-79 300.8 331 53.2
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.7e-79 300.4 283 54.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 1.7e-79 300.4 327 52.6
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.4e-78 297.4 335 50.4
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.4e-78 297.4 329 52.0
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.4e-78 296.6 338 50.3
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.4e-78 296.6 338 50.3
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.4e-78 296.6 338 50.3
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.0e-77 293.5 332 53.3
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 5.9e-77 292.0 336 49.7
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 1.0e-76 291.2 335 51.9
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 8.5e-76 288.1 333 48.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.9e-75 287.0 334 49.7
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.2e-75 286.2 334 51.8
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 4.2e-75 285.8 337 50.4
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.1e-74 283.5 220 64.1
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 3.6e-74 282.7 339 48.1
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.6e-74 282.7 238 59.7
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 8.0e-74 281.6 377 45.4
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.3e-73 280.0 339 48.4
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.3e-73 280.0 339 48.4
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.0e-73 279.3 250 62.4
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-72 276.6 336 47.6
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 4.8e-71 272.3 339 47.5
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 6.3e-71 271.9 334 47.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 6.3e-71 271.9 334 47.9
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.1e-70 271.2 331 49.2
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.8e-70 270.4 339 47.2
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.7e-69 266.5 339 47.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 2.3e-65 253.4 336 47.6
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 4.0e-65 252.7 368 42.9
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 8.8e-65 251.5 316 49.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 2.6e-64 250.0 331 46.8
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 3.4e-64 249.6 340 44.4
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.2e-63 246.9 317 48.3
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.1e-59 234.6 298 46.3
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 7.2e-59 231.9 234 57.7
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.6e-58 229.6 321 45.8
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.7e-58 229.2 312 50.0
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 4.5e-53 212.6 257 47.5
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.0e-52 209.1 210 59.0
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.6e-52 208.8 331 42.9
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.1e-51 208.0 165 64.8
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 7.3e-51 205.3 160 64.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 4.7e-50 202.6 333 39.9
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.1e-50 202.2 332 42.5
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 2.3e-49 200.3 164 61.0
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.9e-47 193.4 204 58.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.4e-46 190.3 204 59.3
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.4e-46 190.3 204 59.8
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.3e-44 184.5 234 47.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.6e-43 179.1 335 37.9
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.5e-43 178.3 171 62.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.2e-40 171.4 175 59.4
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-39 166.8 145 53.1
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.6e-36 155.2 127 55.9
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.3e-35 153.3 210 47.6
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.8e-33 147.5 134 53.0
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.6e-32 143.7 148 59.5
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 1.1e-30 138.3 209 44.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.3e-28 131.3 141 52.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 3.0e-28 130.2 121 52.9
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.1e-26 122.1 133 56.4
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.4e-24 116.7 138 50.7
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 7.1e-22 109.0 102 48.0
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.7e-18 96.3 225 31.1
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-17 94.4 97 48.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 6.4e-15 85.9 305 29.8
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 7.8e-13 79.0 231 31.2
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.7e-12 77.8 88 44.3
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 8.7e-12 75.5 55 61.8
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 4.0e-09 66.6 73 54.8
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 5.4e-06 56.2 52 50.0


User provided reference genes

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