Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 1.1e-198 696.4 340 100.0
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.2e-186 656.4 339 92.0
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 4.6e-186 654.4 339 91.7
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 7.9e-186 653.7 339 92.3
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 8.5e-180 633.6 340 87.9
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.9e-179 632.5 340 88.5
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 2.4e-158 562.4 341 80.6
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 2.7e-149 532.3 342 74.0
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 8.0e-146 520.8 342 70.8
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.0e-141 506.1 343 72.0
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 2.7e-141 505.8 338 69.5
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 1.9e-139 499.6 334 69.2
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 4.3e-139 498.4 338 69.2
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 7.3e-139 497.7 344 68.9
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 3.6e-138 495.4 344 66.9
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 3.1e-137 492.3 342 70.8
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.5e-136 490.0 338 71.3
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 2.9e-135 485.7 348 68.1
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 3.2e-134 482.3 335 66.9
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.0e-133 479.6 337 68.5
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 2.7e-133 479.2 336 68.5
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 2.3e-132 476.1 337 67.7
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 2.3e-132 476.1 343 65.9
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 5.0e-132 474.9 346 66.5
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 6.6e-132 474.6 339 66.7
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 8.6e-132 474.2 345 65.2
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 8.6e-132 474.2 337 67.4
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 8.6e-132 474.2 341 66.0
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.5e-131 473.4 334 67.7
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.9e-131 473.0 340 65.0
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 2.5e-131 472.6 345 65.8
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 3.3e-131 472.2 335 67.8
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 5.6e-131 471.5 335 67.8
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 7.3e-131 471.1 340 65.3
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 9.5e-131 470.7 335 66.3
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 1.2e-130 470.3 340 65.9
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.6e-130 469.9 340 64.7
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 1.6e-130 469.9 337 65.0
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.6e-130 469.9 335 66.9
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 2.1e-130 469.5 348 66.4
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 2.1e-130 469.5 333 66.1
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 4.7e-130 468.4 342 65.2
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 6.2e-130 468.0 339 64.9
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 8.0e-130 467.6 336 66.1
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 1.1e-129 467.2 339 65.8
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 1.8e-129 466.5 343 65.0
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 3.1e-129 465.7 343 63.3
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 4.0e-129 465.3 342 64.9
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 4.0e-129 465.3 333 64.3
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 5.2e-129 464.9 331 63.4
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 1.2e-128 463.8 333 62.8
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 1.2e-128 463.8 348 62.4
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 1.2e-128 463.8 346 64.2
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.5e-128 463.4 339 64.3
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 3.4e-128 462.2 333 62.8
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 4.4e-128 461.8 331 63.1
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 4.4e-128 461.8 343 63.0
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 5.8e-128 461.5 333 63.7
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 9.8e-128 460.7 332 64.2
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 1.3e-127 460.3 338 66.9
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 2.2e-127 459.5 332 64.5
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 3.7e-127 458.8 334 62.6
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 8.3e-127 457.6 330 64.8
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 1.1e-126 457.2 346 65.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 5.4e-126 454.9 333 63.7
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 7.1e-126 454.5 329 62.6
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 9.2e-126 454.1 341 62.5
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 4.6e-125 451.8 350 62.9
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 2.3e-124 449.5 346 60.4
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 3.0e-124 449.1 340 62.9
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.0e-124 449.1 336 64.0
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 3.0e-124 449.1 337 63.8
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 3.9e-124 448.7 342 61.4
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.6e-124 447.6 336 63.7
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.9e-123 446.4 335 64.8
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 2.5e-123 446.0 346 62.7
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 3.3e-123 445.7 343 62.1
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 1.2e-122 443.7 342 63.7
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.1e-122 443.0 337 65.9
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 2.8e-122 442.6 335 62.7
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 5.8e-120 434.9 337 62.9
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 7.6e-120 434.5 387 55.3
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 6.4e-119 431.4 365 58.1
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 1.4e-118 430.3 286 72.0
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 7.8e-117 424.5 330 61.8
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.0e-116 424.1 330 61.5
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.3e-116 422.9 330 61.2
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 8.6e-116 421.0 344 59.0
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 5.6e-115 418.3 337 59.3
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 1.2e-114 417.2 376 57.2
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.1e-114 416.4 330 60.9
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.1e-114 414.5 330 60.6
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 8.1e-114 414.5 335 59.4
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 1.1e-113 414.1 336 59.2
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.5e-112 410.2 337 60.5
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-112 410.2 330 59.4
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 4.9e-111 405.2 354 56.5
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 2.7e-109 399.4 335 55.5
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 1.3e-108 397.1 336 57.1
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 5.1e-108 395.2 264 69.7
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 1.5e-107 393.7 348 58.6
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 4.3e-107 392.1 342 58.2
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 4.8e-106 388.7 435 48.3
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 2.4e-105 386.3 335 56.7
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.3e-100 370.5 346 52.3
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 6.6e-100 368.2 353 53.8
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.1e-90 336.7 258 61.6
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 1.0e-87 327.8 258 60.9
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.8e-87 325.9 287 58.9
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 1.4e-81 307.4 232 61.6
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 4.2e-78 295.8 184 74.5
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.2e-77 294.3 191 71.7
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 9.7e-75 284.6 344 41.9
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 1.7e-71 273.9 342 39.5
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 3.8e-63 246.1 331 40.5
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.7e-58 229.6 201 57.2
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.2e-50 203.8 166 66.9
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 2.0e-48 197.2 184 58.2
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.1e-45 187.2 261 39.1
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.8e-44 184.1 195 49.2
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 9.1e-41 171.8 181 49.7
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 1.8e-36 157.5 173 49.1
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.2e-34 150.6 224 40.2
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.3e-26 124.8 81 70.4
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 5.2e-20 102.8 130 40.8
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.2e-16 91.7 69 60.9
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.2e-16 91.7 69 60.9
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.2e-16 91.7 69 60.9
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 1.0e-15 88.6 69 59.4
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 1.7e-15 87.8 128 37.5
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.7e-13 79.7 162 35.2
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 6.8e-12 75.9 53 62.3
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 6.8e-12 75.9 53 62.3
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 8.9e-12 75.5 71 52.1
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.6e-11 73.9 71 52.1
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 9.8e-11 72.0 71 50.7
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 4.1e-09 66.6 56 53.6
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 6.0e-08 62.8 61 49.2
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 7.8e-08 62.4 69 44.9
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 7.8e-08 62.4 89 38.2


User provided reference genes

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