Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 7.1e-123 444.1 255 100.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.2e-101 373.6 255 87.1
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 3.5e-101 372.1 255 86.3
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.7e-100 369.8 255 86.3
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 3.6e-90 335.5 266 77.1
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 7.5e-88 327.8 255 80.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.7e-79 300.1 250 68.0
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.7e-79 298.9 249 70.3
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.5e-77 292.4 253 63.2
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.5e-77 292.0 239 65.7
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 4.2e-75 285.4 243 60.9
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 1.6e-74 283.5 250 68.4
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 2.3e-73 279.6 258 60.9
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.0e-73 279.3 241 65.6
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.2e-72 277.3 240 66.2
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.5e-72 276.9 241 57.7
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 3.4e-72 275.8 251 57.4
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 9.8e-72 274.2 242 59.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.2e-71 273.1 240 67.1
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.7e-71 272.3 240 58.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 6.3e-71 271.6 256 60.5
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 6.3e-71 271.6 261 64.8
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 4.1e-70 268.9 244 64.3
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 4.1e-70 268.9 263 60.5
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 7.0e-70 268.1 246 57.3
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 2.7e-69 266.2 241 65.1
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.7e-69 266.2 242 57.0
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 5.9e-69 265.0 241 57.3
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 7.8e-69 264.6 249 61.4
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.0e-68 264.2 242 60.3
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 3.9e-68 262.3 247 57.9
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 6.6e-68 261.5 241 65.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 6.6e-68 261.5 241 57.3
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 6.6e-68 261.5 242 59.5
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 8.6e-68 261.2 253 56.5
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 1.9e-67 260.0 243 64.2
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.2e-66 257.3 242 62.0
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.6e-66 256.9 241 55.6
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.6e-66 256.9 257 56.0
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.6e-66 255.8 250 63.2
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 6.1e-66 255.0 245 55.9
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 1.8e-65 253.4 241 60.6
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.8e-65 253.4 241 60.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 2.3e-65 253.1 255 62.4
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.0e-65 252.3 245 57.6
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 4.0e-65 252.3 254 53.1
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 5.2e-65 251.9 247 62.8
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.2e-65 251.9 241 63.9
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 5.2e-65 251.9 241 56.8
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 6.8e-65 251.5 241 58.1
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 1.2e-64 250.8 249 57.0
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 1.2e-64 250.8 244 55.3
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.5e-64 250.4 245 53.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 4.4e-64 248.8 241 56.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 7.5e-64 248.1 239 62.3
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 9.8e-64 247.7 241 62.7
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 9.8e-64 247.7 241 62.2
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.3e-63 247.3 241 62.7
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.2e-63 246.5 241 54.8
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.9e-63 246.1 241 62.2
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 2.9e-63 246.1 241 62.2
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 2.9e-63 246.1 241 62.2
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 3.7e-63 245.7 243 61.7
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 6.4e-63 245.0 243 58.8
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 8.3e-63 244.6 241 61.8
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 8.3e-63 244.6 241 62.2
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 8.3e-63 244.6 241 62.7
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 8.3e-63 244.6 247 54.7
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.4e-62 243.8 242 57.9
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.9e-62 243.4 241 62.7
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 7.0e-62 241.5 244 54.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 7.0e-62 241.5 241 56.0
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 7.0e-62 241.5 252 50.8
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 9.2e-62 241.1 243 55.1
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.6e-61 240.4 244 54.9
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 6.0e-61 238.4 245 49.8
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 7.8e-61 238.0 247 53.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.3e-60 237.3 241 58.5
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.3e-60 236.5 238 59.2
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 3.9e-60 235.7 255 56.9
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 8.6e-60 234.6 259 60.6
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 1.9e-59 233.4 243 53.5
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.8e-57 226.9 243 56.0
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 2.2e-55 219.9 190 68.9
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 4.9e-55 218.8 243 56.0
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.4e-54 217.2 243 55.6
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 5.4e-54 215.3 243 56.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.4e-54 215.3 226 56.6
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.3e-52 210.7 244 50.0
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.3e-51 206.1 354 42.7
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 7.3e-51 204.9 275 50.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 1.2e-50 204.1 200 53.0
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.6e-50 203.8 236 52.5
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 2.3e-49 199.9 248 46.8
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 2.3e-49 199.9 256 48.8
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 2.0e-48 196.8 234 58.5
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 2.0e-48 196.8 243 50.2
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.9e-46 190.3 243 43.2
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 3.2e-46 189.5 243 43.2
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 8.6e-44 181.4 254 43.3
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-42 177.6 243 40.3
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.4e-41 174.1 240 46.7
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.1e-41 172.9 243 39.9
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.6e-40 169.9 159 51.6
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 7.6e-40 168.3 254 40.2
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 4.9e-39 165.6 245 39.2
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 4.9e-39 165.6 245 39.2
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 7.1e-38 161.8 251 39.0
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 1.2e-37 161.0 159 49.7
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 1.2e-37 161.0 159 49.7
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 5.6e-35 152.1 137 61.3
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 1.6e-34 150.6 156 52.6
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.1e-34 150.2 169 46.2
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.9e-32 141.4 241 34.4
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.4e-31 138.7 239 44.8
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.4e-30 137.5 137 54.0
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 6.6e-28 128.6 244 34.0
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 6.2e-26 122.1 244 34.8
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 2.4e-25 120.2 239 41.4
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 2.2e-23 113.6 135 47.4
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 6.0e-21 105.5 127 44.1
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 5.6e-19 99.0 81 61.7
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 8.1e-18 95.1 169 33.7
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.2e-15 87.0 104 45.2
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 1.6e-13 80.9 112 41.1
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 1.6e-13 80.9 112 41.1
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 7.9e-13 78.6 112 40.2
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 7.9e-13 78.6 112 40.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.8e-12 77.4 167 31.7
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 3.0e-12 76.6 112 39.3
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.6e-10 70.9 125 35.2
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 6.3e-10 68.9 45 64.4
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 3.1e-09 66.6 38 78.9
THA.LOC104818140 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 3.8e-07 59.7 73 49.3
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-06 58.2 55 50.9
Nitab4.5_0003378g0020 Nicotiana tabacum HOM05D005295 ORTHO05D005962 7.2e-06 55.5 33 84.8


User provided reference genes

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