Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.0e-198 696.8 426 100.0
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 8.8e-142 507.7 443 74.0
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 1.9e-120 436.8 441 64.6
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.7e-113 413.7 461 68.5
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 9.8e-109 397.9 297 77.8
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 8.1e-95 351.7 436 58.7
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.9e-92 343.2 460 59.8
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.7e-31 141.4 199 45.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 2.2e-31 141.0 327 40.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 6.3e-31 139.4 274 41.2
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.8e-30 137.9 198 45.5
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.1e-30 137.1 290 41.0
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 4.1e-30 136.7 269 39.8
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 6.5e-28 129.4 316 37.3
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.9e-27 127.9 206 44.7
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 5.5e-27 126.3 215 40.9
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.1e-26 124.4 307 38.8
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.7e-26 124.0 248 39.9
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.6e-26 123.6 239 40.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 4.7e-26 123.2 192 46.4
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 8.0e-26 122.5 225 40.9
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 1.0e-25 122.1 228 41.7
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.4e-25 121.7 321 34.0
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.8e-25 121.3 263 38.4
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.3e-25 120.9 264 39.8
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.0e-25 120.6 196 42.3
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 6.7e-25 119.4 249 39.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 8.8e-25 119.0 246 39.0
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.1e-24 118.6 190 42.1
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.5e-24 118.2 218 42.7
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.4e-24 116.7 344 34.3
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 7.4e-24 115.9 234 40.2
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.3e-23 115.2 332 33.7
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 2.2e-23 114.4 318 33.6
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-23 114.4 318 33.6
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.2e-23 114.4 318 33.6
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.2e-23 114.4 226 38.9
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.7e-23 113.6 222 41.0
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.7e-23 113.6 264 38.6
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.8e-23 113.2 212 39.2
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 6.3e-23 112.8 320 34.4
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 6.3e-23 112.8 323 35.0
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 8.2e-23 112.5 218 42.2
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 8.2e-23 112.5 218 42.2
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.1e-22 112.1 202 43.1
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.1e-22 112.1 253 39.1
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.4e-22 111.7 190 45.8
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.4e-22 110.9 239 37.7
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 4.1e-22 110.2 229 40.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 4.1e-22 110.2 216 41.2
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-21 108.6 344 33.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 1.6e-21 108.2 458 36.7
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.6e-21 108.2 235 35.7
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.6e-21 108.2 310 33.2
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.6e-21 108.2 266 38.0
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.0e-21 107.8 447 36.2
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 2.6e-21 107.5 213 40.8
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.5e-21 107.1 260 34.2
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 7.7e-21 105.9 264 36.0
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-20 105.5 278 33.8
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 2.9e-20 104.0 206 41.3
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.8e-20 103.6 313 31.6
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.5e-19 101.7 336 33.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.5e-19 101.7 205 41.5
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 3.2e-19 100.5 144 45.8
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 4.2e-19 100.1 261 34.5
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 5.5e-19 99.8 231 37.7
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 7.2e-19 99.4 205 39.5
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.2e-18 98.6 189 40.7
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 4.7e-18 96.7 472 28.8
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.7e-18 96.7 205 39.0
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 6.1e-18 96.3 149 45.6
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.8e-17 94.7 297 33.3
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-17 94.7 317 30.6
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.8e-17 94.7 281 34.9
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.3e-17 94.4 129 48.1
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 3.0e-17 94.0 265 32.5
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 3.0e-17 94.0 247 33.6
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.0e-17 94.0 313 32.6
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.0e-17 94.0 332 32.2
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 6.8e-17 92.8 203 37.9
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 6.8e-17 92.8 245 35.5
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.2e-16 92.0 292 36.6
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 1.5e-16 91.7 335 29.9
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.5e-16 91.7 126 44.4
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 2.0e-16 91.3 240 32.9
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.0e-16 91.3 246 33.3
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.6e-16 90.9 252 31.7
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 3.4e-16 90.5 215 34.9
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 9.8e-16 89.0 294 34.7
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 2.8e-15 87.4 233 33.9
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 2.8e-15 87.4 254 30.7
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.1e-14 85.5 235 31.9
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.8e-14 84.7 144 36.8
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.4e-14 84.3 255 31.4
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 3.1e-14 84.0 254 30.3
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 3.1e-14 84.0 254 30.3
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 3.1e-14 84.0 235 31.5
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.1e-14 84.0 276 31.9
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.4e-14 83.2 221 31.7
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 7.0e-14 82.8 221 32.1
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 7.0e-14 82.8 256 31.2
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 9.1e-14 82.4 235 31.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.5e-13 80.5 268 32.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.5e-13 80.1 296 31.8
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 4.5e-13 80.1 272 30.5
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 5.9e-13 79.7 121 43.0
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 7.7e-13 79.3 274 29.9
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.7e-13 79.3 436 31.7
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 1.7e-12 78.2 237 35.4
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.0e-12 76.6 297 32.3
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.5e-11 75.1 322 31.1
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.5e-11 75.1 327 30.3
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-11 74.3 109 42.2
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 3.2e-11 73.9 316 29.1
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 4.2e-11 73.6 259 30.5
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.2e-11 73.6 267 34.1
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 9.4e-11 72.4 295 29.5
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 9.4e-11 72.4 252 31.3
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 1.2e-10 72.0 109 39.4
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 2.7e-10 70.9 223 32.7
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 2.7e-10 70.9 141 36.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 2.7e-10 70.9 120 42.5
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 3.6e-10 70.5 189 32.8
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 3.6e-10 70.5 189 32.8
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 4.7e-10 70.1 155 38.1
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 4.7e-10 70.1 262 30.5
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 6.1e-10 69.7 141 36.2
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 6.1e-10 69.7 309 29.1
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 8.0e-10 69.3 192 32.8
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 8.0e-10 69.3 109 45.9
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 8.0e-10 69.3 280 32.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 8.0e-10 69.3 164 31.7
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.4e-09 68.6 493 28.8
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 1.4e-09 68.6 202 32.7
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 1.8e-09 68.2 248 35.9
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 1.8e-09 68.2 264 33.0
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 2.3e-09 67.8 183 33.9
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.0e-09 67.0 437 29.5
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 4.0e-09 67.0 271 28.8
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 4.0e-09 67.0 253 29.6
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 5.2e-09 66.6 116 40.5
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 5.2e-09 66.6 117 43.6
Lj9C256T7 Lonicera japonica HOM05D012621 ORTHO05D004349 5.2e-09 66.6 113 44.2
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 6.8e-09 66.2 192 33.3
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 8.8e-09 65.9 215 32.1
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 1.2e-08 65.5 235 31.9
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 5.7e-08 63.2 187 35.8
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 5.7e-08 63.2 99 40.4
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.7e-07 61.6 195 33.3
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.7e-07 61.6 313 28.4
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.7e-07 61.6 253 30.0
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 3.7e-07 60.5 267 28.8
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 3.7e-07 60.5 115 33.9
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.7e-07 60.5 213 29.6
Lj8A559T40 Lonicera japonica HOM05D012621 ORTHO05D004349 4.9e-07 60.1 108 39.8
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 8.3e-07 59.3 108 38.0
MELO3C005998.2 Cucumis melo HOM05D030996 ORTHO05D004349 1.1e-06 58.9 98 38.8
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 1.1e-06 58.9 269 29.0
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 1.1e-06 58.9 227 30.8
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-06 58.9 293 29.0
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.4e-06 58.5 125 31.2
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.8e-06 58.2 115 34.8
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 2.4e-06 57.8 101 39.6
Sopen01g040010 Solanum pennellii HOM05D019980 ORTHO05D022204 2.4e-06 57.8 99 42.4
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.4e-06 57.8 293 28.7
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 3.1e-06 57.4 112 37.5
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.1e-06 57.4 260 28.1
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.1e-06 57.4 246 27.2
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 3.1e-06 57.4 116 36.2
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 4.1e-06 57.0 191 27.7
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.4e-06 56.6 105 40.0
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.0e-06 56.2 145 29.7
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 9.1e-06 55.8 178 28.1
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 9.1e-06 55.8 97 39.2


User provided reference genes

Program Settings