Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 4.5e-208 727.6 353 100.0
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 3.3e-134 482.3 303 77.9
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 1.6e-133 479.9 303 78.2
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 2.8e-133 479.2 303 77.9
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 4.0e-132 475.3 303 76.6
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 1.5e-131 473.4 303 76.2
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 1.0e-127 460.7 302 75.2
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.4e-113 412.9 311 65.3
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 1.2e-112 410.6 311 65.3
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 7.9e-112 407.9 313 63.9
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 5.6e-110 401.7 303 65.0
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 1.8e-108 396.7 303 64.7
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 1.5e-107 393.7 321 60.7
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 7.6e-107 391.3 314 60.8
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 9.9e-107 391.0 303 62.7
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.9e-106 389.4 308 61.0
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.4e-106 388.3 332 58.4
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 1.1e-105 387.5 311 60.1
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-104 384.0 313 59.7
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 2.1e-104 383.3 303 60.7
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.1e-104 383.3 308 59.7
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 4.6e-104 382.1 313 60.1
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 6.0e-104 381.7 302 62.9
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 6.0e-104 381.7 303 61.1
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 2.3e-103 379.8 313 60.4
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 1.5e-102 377.1 308 58.4
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 2.5e-102 376.3 302 61.6
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.3e-102 375.6 303 61.4
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 4.3e-102 375.6 304 59.9
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 4.3e-102 375.6 330 57.0
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 9.6e-102 374.4 303 60.4
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 2.1e-101 373.2 312 59.9
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 2.1e-101 373.2 316 58.9
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 3.7e-101 372.5 322 59.9
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 6.2e-101 371.7 313 58.8
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 1.1e-100 370.9 312 57.4
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.4e-100 370.5 298 60.7
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.4e-100 370.5 303 60.4
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 1.4e-100 370.5 336 56.8
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 1.4e-100 370.5 312 58.7
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 1.8e-100 370.2 312 57.4
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 1.8e-100 370.2 307 57.7
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 1.8e-100 370.2 307 57.7
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 1.8e-100 370.2 316 56.6
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 2.4e-100 369.8 331 57.1
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 3.1e-100 369.4 303 58.4
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 6.9e-100 368.2 324 57.4
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 1.2e-99 367.5 303 58.1
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 2.0e-99 366.7 303 58.4
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 2.0e-99 366.7 312 59.3
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.6e-99 366.3 303 57.4
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 3.4e-99 365.9 331 55.3
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 3.4e-99 365.9 304 59.2
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 4.5e-99 365.5 318 56.9
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 5.8e-99 365.2 303 57.8
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 5.8e-99 365.2 316 56.3
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.6e-99 364.8 323 57.3
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 7.6e-99 364.8 303 57.8
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 1.0e-98 364.4 293 58.4
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 1.3e-98 364.0 304 59.9
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 1.3e-98 364.0 303 57.8
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.3e-98 364.0 303 59.1
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 1.7e-98 363.6 303 56.4
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 2.2e-98 363.2 311 57.6
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 3.8e-98 362.5 303 58.4
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 6.5e-98 361.7 303 57.4
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 1.1e-97 360.9 321 56.1
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 1.4e-97 360.5 304 57.9
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 1.9e-97 360.1 303 57.1
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 2.5e-97 359.8 303 57.4
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 5.5e-97 358.6 312 57.7
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 7.1e-97 358.2 303 57.8
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 7.1e-97 358.2 301 57.5
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 9.3e-97 357.8 303 57.1
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 9.3e-97 357.8 303 57.1
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 9.3e-97 357.8 316 55.7
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 1.6e-96 357.1 303 56.8
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 1.6e-96 357.1 303 56.8
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 1.6e-96 357.1 303 57.1
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 2.1e-96 356.7 307 57.3
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 6.0e-96 355.1 303 58.1
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 6.0e-96 355.1 303 58.1
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.8e-95 353.6 315 53.0
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 3.0e-95 352.8 315 53.0
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 3.0e-95 352.8 312 56.7
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 5.1e-95 352.1 288 59.4
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 8.7e-95 351.3 300 56.7
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 2.5e-94 349.7 304 56.9
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 6.9e-92 341.7 302 58.3
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 2.0e-91 340.1 306 55.9
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.0e-90 337.8 303 53.8
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 6.5e-90 335.1 294 56.5
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 8.5e-90 334.7 303 54.8
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.9e-89 333.6 304 53.9
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.2e-88 330.9 321 48.6
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 1.0e-87 327.8 309 52.4
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 1.8e-87 327.0 324 48.8
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.3e-87 326.6 302 53.0
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.0e-87 326.2 291 53.6
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 8.7e-87 324.7 302 52.0
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 8.7e-87 324.7 302 52.0
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.9e-86 323.6 302 52.3
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.3e-86 322.8 302 52.3
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 4.3e-86 322.4 334 48.2
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.3e-86 322.4 303 51.5
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 5.7e-86 322.0 326 49.4
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.2e-85 320.1 331 47.1
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.2e-85 320.1 331 47.1
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.8e-85 319.7 332 47.0
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.7e-85 319.3 331 46.8
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.9e-84 315.1 302 50.7
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.2e-83 314.3 311 50.2
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.6e-83 313.2 302 51.3
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.2e-82 310.1 313 47.9
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 2.5e-81 306.6 323 50.2
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.2e-81 306.2 331 45.9
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 7.2e-81 305.1 310 47.4
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 9.4e-81 304.7 303 52.5
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 9.4e-81 304.7 317 50.5
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 7.9e-80 301.6 302 47.0
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 1.8e-79 300.4 298 51.3
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 1.5e-78 297.4 293 51.5
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 2.6e-78 296.6 298 49.7
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.3e-77 294.3 264 56.1
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 1.3e-74 284.3 304 49.3
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.2e-73 279.6 303 46.9
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 2.7e-72 276.6 229 56.8
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 4.8e-69 265.8 302 47.4
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 1.1e-68 264.6 318 41.5
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 4.1e-68 262.7 250 54.0
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 5.9e-67 258.8 173 65.3
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 1.0e-66 258.1 326 42.0
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 5.2e-63 245.7 231 51.9
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.8e-60 237.3 303 44.6
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.3e-58 231.1 273 45.1
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 1.7e-58 230.7 293 46.1
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 3.6e-56 223.0 302 42.1
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 4.8e-53 212.6 336 35.7
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 1.3e-50 204.5 271 43.2
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 1.9e-49 200.7 201 50.7
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 5.6e-41 172.6 96 89.6
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 1.4e-39 167.9 208 43.8
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 3.2e-36 156.8 255 34.1
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-30 138.3 86 72.1
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 5.8e-30 136.0 96 62.5
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 8.6e-26 122.1 96 61.5
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.6e-19 99.8 164 36.0
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 5.6e-17 92.8 176 32.4
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 9.5e-17 92.0 176 32.4
Nn2g11897 Nelumbo nucifera HOM05D004606 ORTHO05D005086 4.6e-11 73.2 68 51.5
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.8e-06 56.2 70 38.6


User provided reference genes

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