Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 2.6e-101 372.1 191 100.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 5.8e-85 317.8 191 86.9
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.7e-84 316.2 192 85.9
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.4e-84 314.3 192 85.4
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 1.1e-83 313.5 191 85.3
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 2.1e-82 309.3 191 83.8
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 7.8e-82 307.4 192 83.3
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.8e-38 163.3 182 51.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.6e-37 159.5 204 48.5
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.8e-36 155.6 183 49.7
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 9.4e-35 151.0 200 47.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 2.7e-34 149.4 201 47.8
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 3.6e-34 149.1 174 50.0
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.6e-34 148.7 199 46.2
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.9e-34 147.9 204 46.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 1.4e-33 147.1 196 49.5
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.8e-33 146.7 204 45.1
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 2.3e-33 146.4 196 49.5
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-33 146.0 204 45.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 6.7e-33 144.8 185 47.6
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.5e-32 143.7 195 47.2
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 2.0e-32 143.3 189 47.6
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.6e-32 142.9 201 45.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 2.6e-32 142.9 204 45.1
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 5.7e-32 141.7 191 45.0
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 5.7e-32 141.7 197 46.2
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 7.4e-32 141.4 208 44.2
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 7.4e-32 141.4 162 51.2
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.4e-32 141.4 196 46.4
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 7.4e-32 141.4 196 46.4
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 4.8e-31 138.7 193 45.6
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 6.3e-31 138.3 193 45.1
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 6.3e-31 138.3 193 45.1
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 8.2e-31 137.9 189 45.5
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 8.2e-31 137.9 189 43.9
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.4e-30 137.1 197 43.7
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.4e-30 137.1 193 45.1
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 1.4e-30 137.1 185 44.9
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.8e-30 136.7 202 41.6
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.8e-30 136.7 221 42.5
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 3.1e-30 136.0 178 48.3
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 3.1e-30 136.0 195 46.2
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 1.2e-29 134.0 206 47.1
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.2e-29 134.0 193 45.6
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 4.5e-29 132.1 231 39.8
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 5.9e-29 131.7 184 45.1
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.2e-28 129.8 186 45.7
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.2e-28 129.8 202 41.1
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-28 129.4 193 42.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-28 129.0 188 42.6
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-28 129.0 193 42.0
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-28 129.0 193 42.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.8e-28 129.0 193 42.0
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 3.8e-28 129.0 194 42.3
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.0e-28 128.6 193 41.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 5.0e-28 128.6 194 43.3
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 6.5e-28 128.3 189 46.0
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 8.5e-28 127.9 201 43.3
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.5e-28 127.9 193 41.5
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.5e-28 127.9 188 41.5
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 5.5e-27 125.2 191 42.4
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 9.4e-27 124.4 191 42.4
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.2e-26 124.0 150 48.0
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.2e-26 124.0 194 43.8
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-26 123.6 192 43.2
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.1e-26 123.2 193 40.9
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.7e-26 122.9 187 43.9
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.7e-26 122.1 193 40.4
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 7.9e-26 121.3 187 43.3
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.8e-25 120.2 177 43.5
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 5.2e-25 118.6 190 42.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 8.8e-25 117.9 184 41.8
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 2.6e-24 116.3 191 39.3
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 5.7e-24 115.2 189 41.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-23 114.0 191 40.3
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.8e-23 112.1 199 40.2
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.3e-22 108.6 194 41.8
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 7.0e-22 108.2 137 46.7
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 9.1e-22 107.8 206 37.9
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.2e-21 107.5 148 43.2
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-21 107.1 186 40.9
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-21 107.1 189 39.7
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-21 107.1 186 39.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.6e-21 107.1 186 40.9
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.6e-21 107.1 185 41.6
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 2.6e-21 106.3 191 41.4
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.5e-21 105.9 152 44.1
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 3.5e-21 105.9 210 40.0
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 4.5e-21 105.5 140 46.4
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 5.9e-21 105.1 181 38.1
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 7.7e-21 104.8 186 40.3
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 1.0e-20 104.4 191 38.7
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.2e-20 103.2 191 38.2
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.2e-20 103.2 180 39.4
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.8e-20 102.4 212 36.8
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 5.0e-20 102.1 189 39.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 6.5e-20 101.7 187 42.2
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.1e-19 100.9 158 44.9
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.5e-19 100.5 156 41.7
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.5e-19 99.8 122 50.8
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 2.5e-19 99.8 194 38.1
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.5e-19 99.8 181 39.2
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 3.2e-19 99.4 195 34.9
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 3.2e-19 99.4 187 36.9
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 3.2e-19 99.4 181 37.0
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 5.5e-19 98.6 193 37.8
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.2e-19 98.2 161 41.0
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.2e-18 97.4 80 62.5
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 2.7e-18 96.3 172 41.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.7e-18 96.3 86 61.6
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 4.7e-18 95.5 191 35.6
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 8.0e-18 94.7 199 35.2
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.8e-17 93.6 168 40.5
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 2.3e-17 93.2 152 42.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 8.8e-17 91.3 184 38.6
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-16 90.9 136 39.0
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.2e-16 90.9 136 39.0
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.2e-16 90.9 187 36.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.5e-16 90.5 171 35.7
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.5e-16 90.5 92 57.6
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.0e-16 90.1 189 36.0
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-16 89.4 176 38.1
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 3.3e-16 89.4 184 38.0
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 4.4e-16 89.0 171 36.3
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 1.3e-15 87.4 168 33.9
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-15 87.4 171 35.7
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 1.3e-15 87.4 191 38.2
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.7e-15 87.0 187 34.8
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.7e-15 87.0 187 34.8
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 2.2e-15 86.7 201 36.3
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 2.8e-15 86.3 191 38.2
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 3.7e-15 85.9 187 34.8
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.7e-15 85.9 186 32.8
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.7e-15 85.9 186 32.8
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 6.3e-15 85.1 147 35.4
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.4e-14 84.0 166 39.8
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 1.8e-14 83.6 171 38.6
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.4e-14 83.2 161 40.4
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 3.1e-14 82.8 193 35.2
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 4.5e-13 79.0 166 36.7
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 5.9e-13 78.6 96 49.0
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 7.7e-13 78.2 178 32.6
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.0e-12 77.8 218 33.9
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-12 76.6 183 34.4
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-12 76.6 94 45.7
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.2e-12 76.6 94 45.7
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 6.5e-12 75.1 91 45.1
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-11 73.9 191 34.6
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.5e-11 73.9 191 34.6
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 5.5e-11 72.0 97 42.3
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 5.5e-11 72.0 88 43.2
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 5.5e-11 72.0 88 43.2
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.6e-10 70.5 89 46.1
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-10 70.5 89 46.1
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-10 70.5 89 46.1
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.6e-10 70.5 148 37.2
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-09 65.5 50 58.0
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-09 65.5 50 58.0
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.0e-08 63.5 144 33.3
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 9.8e-08 61.2 135 34.8
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 9.8e-08 61.2 135 34.8
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 9.8e-08 61.2 164 27.4
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-07 60.8 135 31.1
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.2e-07 60.1 94 40.4
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 2.2e-07 60.1 135 32.6
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 2.2e-07 60.1 162 29.6
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 3.7e-07 59.3 73 43.8
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 8.3e-07 58.2 134 32.8
Sabra06G0168800 Salix brachista HOM05D000001 ORTHO05D004044 1.1e-06 57.8 90 36.7
Sed0023203 Sechium edule HOM05D004036 ORTHO05D004576 1.4e-06 57.4 69 49.3
Potri.006G218900 Populus trichocarpa HOM05D000001 ORTHO05D004044 2.4e-06 56.6 90 36.7
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 3.1e-06 56.2 151 32.5
FAN27G1566 Fragaria x ananassa HOM05D000001 ORTHO05D004044 3.1e-06 56.2 77 40.3
COL.COLO4_21160 Corchorus olitorius HOM05D000001 ORTHO05D004044 4.1e-06 55.8 84 39.3
FvH4_2g30791 Fragaria vesca HOM05D000001 ORTHO05D004044 4.1e-06 55.8 77 40.3
FAN20G1082 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.1e-06 55.8 77 40.3
FAN24G2651 Fragaria x ananassa HOM05D000001 ORTHO05D004044 4.1e-06 55.8 77 40.3
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 4.1e-06 55.8 176 31.2
FAN15G1549 Fragaria x ananassa HOM05D000001 ORTHO05D004044 5.4e-06 55.5 83 37.3
MD15G1047700 Malus domestica HOM05D000001 ORTHO05D004044 5.4e-06 55.5 123 33.3
Potri.018G047700 Populus trichocarpa HOM05D000001 ORTHO05D004044 5.4e-06 55.5 90 35.6
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 7.0e-06 55.1 151 32.5
Nn6g35692 Nelumbo nucifera HOM05D000001 ORTHO05D004044 7.0e-06 55.1 71 39.4


User provided reference genes

Program Settings