Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.2e-179 632.1 306 100.0
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 4.7e-105 385.2 286 69.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-104 383.6 287 69.7
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.7e-102 376.7 287 68.3
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 8.3e-102 374.4 287 68.6
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 9.5e-98 360.9 287 64.1
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-93 347.1 287 62.7
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 7.1e-93 344.7 287 62.7
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.5e-90 337.0 281 62.3
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 7.3e-90 334.7 278 61.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 9.6e-90 334.3 274 62.0
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 1.2e-89 334.0 287 60.6
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 1.2e-89 334.0 285 61.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.1e-89 333.2 290 59.7
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 6.2e-89 331.6 276 60.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 8.1e-89 331.3 274 63.1
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.1e-88 330.9 278 62.2
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-88 330.5 281 60.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 1.8e-88 330.1 276 59.8
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 2.4e-88 329.7 281 60.9
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 4.0e-88 328.9 285 59.6
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.0e-87 326.6 285 58.6
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.4e-87 325.5 285 58.9
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 5.8e-87 325.1 286 59.8
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 7.6e-87 324.7 276 59.1
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 7.6e-87 324.7 288 60.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 9.9e-87 324.3 274 60.6
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.3e-86 323.9 278 58.6
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.3e-86 323.9 287 57.8
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 2.2e-86 323.2 285 58.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.9e-86 322.8 281 58.4
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.4e-85 320.5 290 57.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.4e-85 319.7 306 56.2
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 4.2e-85 318.9 285 57.5
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.3e-85 317.8 285 58.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 9.3e-85 317.8 287 57.8
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.2e-84 317.4 285 56.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.6e-84 317.0 285 57.5
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 1.6e-84 317.0 281 59.4
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 3.5e-84 315.8 280 57.1
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 4.6e-84 315.5 285 57.2
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 4.6e-84 315.5 286 58.0
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.6e-84 315.5 285 58.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 7.8e-84 314.7 289 57.1
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.8e-84 314.7 291 56.0
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 7.8e-84 314.7 285 59.3
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.0e-83 314.3 285 58.6
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.7e-83 313.5 285 56.5
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.3e-83 313.2 270 59.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.3e-83 313.2 270 59.3
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 3.9e-83 312.4 266 60.9
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 6.6e-83 311.6 285 56.1
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 6.6e-83 311.6 288 56.9
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.1e-82 310.8 285 57.2
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 1.1e-82 310.8 289 57.1
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.9e-82 310.1 264 60.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.9e-82 310.1 288 56.6
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.9e-82 310.1 288 56.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 3.3e-82 309.3 288 56.9
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.3e-81 307.4 245 67.3
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.8e-81 306.2 285 56.5
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.8e-81 306.2 274 57.3
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 3.6e-81 305.8 285 55.8
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 4.8e-81 305.4 285 55.1
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 4.8e-81 305.4 285 56.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 6.2e-81 305.1 285 55.1
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.8e-80 303.5 267 59.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-80 303.1 278 57.2
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.4e-80 303.1 276 57.2
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.3e-80 302.0 267 58.8
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 5.3e-80 302.0 287 55.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.2e-79 300.8 274 58.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.5e-79 300.4 267 58.4
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.5e-79 300.4 286 55.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.0e-79 300.1 276 56.5
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.4e-79 299.3 267 58.8
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 5.8e-79 298.5 287 55.4
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-78 297.0 287 53.7
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-78 296.6 274 55.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.2e-78 296.6 278 54.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 4.9e-78 295.4 284 53.9
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 6.4e-78 295.0 275 55.3
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.4e-78 294.7 234 65.4
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.1e-77 294.3 285 53.3
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.4e-77 293.1 276 55.4
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.2e-77 292.7 286 54.2
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.2e-77 292.7 278 54.0
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 4.2e-77 292.4 280 55.7
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 5.4e-77 292.0 277 55.2
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-77 291.6 285 53.7
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 9.3e-77 291.2 286 53.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 2.1e-76 290.0 279 54.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.0e-76 288.5 288 55.6
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 6.0e-76 288.5 286 53.5
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 7.9e-76 288.1 273 53.5
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-75 287.3 274 53.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.3e-75 287.3 284 51.4
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.8e-75 287.0 285 53.7
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.8e-75 287.0 285 52.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.3e-75 286.6 294 50.7
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 3.0e-75 286.2 287 52.3
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 8.7e-75 284.6 285 51.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 8.7e-75 284.6 285 51.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 8.7e-75 284.6 274 52.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.1e-74 284.3 294 50.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.3e-74 282.3 302 51.3
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 9.6e-74 281.2 287 51.9
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.8e-73 278.9 287 51.6
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.2e-73 278.5 273 50.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.1e-72 276.2 270 54.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.0e-72 275.8 287 51.9
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.0e-72 275.8 279 51.6
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 5.3e-72 275.4 277 52.7
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 6.9e-72 275.0 278 50.7
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 6.4e-70 268.5 250 54.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 3.5e-68 262.7 243 57.2
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.4e-66 255.0 285 49.1
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 7.4e-66 255.0 275 49.5
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.8e-64 250.4 225 58.2
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 7.6e-63 245.0 284 48.6
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.9e-62 243.0 274 47.4
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-61 238.4 241 52.3
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-58 230.7 285 46.3
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.6e-57 227.3 297 43.1
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.1e-56 222.6 273 42.1
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.4e-53 214.2 203 56.2
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.2e-52 211.1 269 41.6
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-52 210.3 222 52.7
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 2.7e-52 209.9 204 54.9
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 3.6e-52 209.5 204 53.9
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.0e-51 206.5 259 40.9
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.1e-51 205.7 218 51.8
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-50 204.5 205 52.2
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 9.7e-50 201.4 206 51.9
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-49 200.3 282 42.2
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 8.2e-49 198.4 302 41.1
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.6e-47 193.4 222 49.5
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.9e-46 189.9 165 55.2
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 2.9e-46 189.9 194 50.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 7.2e-45 185.3 195 52.8
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.0e-43 179.9 277 37.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.8e-41 173.3 182 52.7
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 3.1e-40 169.9 132 63.6
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.2e-37 158.7 183 48.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.0e-35 153.3 275 37.1
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.5e-34 151.0 274 38.3
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 2.0e-31 140.6 96 72.9
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.5e-29 132.5 148 48.6
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 7.2e-29 132.1 240 39.2
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-28 131.0 269 34.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.7e-25 120.9 116 55.2
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.2e-25 120.6 137 46.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.0e-23 114.0 322 30.4
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 1.9e-21 107.5 63 76.2
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 4.2e-21 106.3 127 44.1
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 1.6e-20 104.4 211 30.8
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-14 84.3 118 44.9
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 8.6e-14 82.0 282 23.8
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.1e-12 75.9 77 49.4
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 6.1e-12 75.9 43 79.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.7e-10 69.3 143 31.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.9e-09 67.0 40 75.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.3e-06 58.2 40 62.5
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.0e-06 56.2 40 60.0


User provided reference genes

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