Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G209.31 Capsicum annuum HOM05D000159 ORTHO05D000148 2.0e-47 192.2 106 100.0
Sopen07g027780 Solanum pennellii HOM05D000159 ORTHO05D000148 1.4e-11 73.2 74 60.8
Solyc07g053810.3 Solanum lycopersicum HOM05D000159 ORTHO05D000148 4.0e-11 71.6 38 89.5
DCAR_021254 Daucus carota HOM05D000159 ORTHO05D000148 9.9e-10 67.0 50 68.0
ECA246G4917 Erigeron canadensis HOM05D000159 ORTHO05D000148 9.9e-10 67.0 55 61.8
PGSC0003DMG400032817 Solanum tuberosum HOM05D000159 ORTHO05D000148 2.9e-09 65.5 83 50.6
Actinidia30465 Actinidia chinensis HOM05D000159 ORTHO05D000148 4.9e-09 64.7 35 80.0
Migut.M00166 Erythranthe guttata HOM05D000159 ORTHO05D000148 4.9e-09 64.7 38 76.3
MSTRG.6671 Avicennia marina HOM05D000159 ORTHO05D000148 6.4e-09 64.3 38 76.3
Lsat_1_v5_gn_3_37960 Lactuca sativa HOM05D000159 ORTHO05D000148 6.4e-09 64.3 51 60.8
Nitab4.5_0000638g0040 Nicotiana tabacum HOM05D000159 ORTHO05D000148 6.4e-09 64.3 35 82.9
Nitab4.5_0001752g0040 Nicotiana tabacum HOM05D000159 ORTHO05D000148 6.4e-09 64.3 35 82.9
Nitab4.5_0004959g0040 Nicotiana tabacum HOM05D000159 ORTHO05D000148 6.4e-09 64.3 78 48.7
Nitab4.5_0006721g0040 Nicotiana tabacum HOM05D000159 ORTHO05D000148 8.4e-09 63.9 40 75.0
Dinv13392 Davidia involucrata HOM05D000159 ORTHO05D000148 1.1e-08 63.5 38 71.1
COL.COLO4_31440 Corchorus olitorius HOM05D000159 ORTHO05D000148 1.4e-08 63.2 53 58.5
Manes.17G047500 Manihot esculenta HOM05D000159 ORTHO05D000148 1.4e-08 63.2 55 56.4
CANSAT64G1429 Cannabis sativa HOM05D000159 ORTHO05D000148 1.9e-08 62.8 48 68.8
Peaxi162Scf00059g00113 Petunia axillaris HOM05D000159 ORTHO05D000148 1.9e-08 62.8 34 82.4
GSVIVG01020578001 Vitis vinifera HOM05D000159 ORTHO05D000148 1.9e-08 62.8 35 77.1
HanXRQChr17g0554391 Helianthus annuus HOM05D000159 ORTHO05D000148 2.4e-08 62.4 51 62.7
Cc05_g07500 Coffea canephora HOM05D000159 ORTHO05D000148 3.2e-08 62.0 39 66.7
TWI23G0382 Tripterygium wilfordii HOM05D000159 ORTHO05D000148 3.2e-08 62.0 35 74.3
Peaxi162Scf00981g00419 Petunia axillaris HOM05D000159 ORTHO05D000148 4.1e-08 61.6 35 77.1
Hma1.2p1_0002F.1_g002110 Hydrangea macrophylla HOM05D000159 ORTHO05D000148 5.4e-08 61.2 35 71.4
CiPaw.03G179400 Carya illinoinensis HOM05D000159 ORTHO05D000148 7.1e-08 60.8 73 47.9
Ciclev10016841m.g Citrus clementina HOM05D000159 ORTHO05D000148 7.1e-08 60.8 35 74.3
Thecc.02G183100 Theobroma cacao HOM05D000159 ORTHO05D000148 7.1e-08 60.8 46 58.7
TAR629G3115 Trochodendron aralioides HOM05D000159 ORTHO05D000148 7.1e-08 60.8 33 78.8
C04p63380 Brassica napus HOM05D000159 ORTHO05D000148 9.2e-08 60.5 52 57.7
Lj1A712T59 Lonicera japonica HOM05D000159 ORTHO05D000148 9.2e-08 60.5 38 73.7
CSS0021322 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D000148 1.2e-07 60.1 38 71.1
Lsat_1_v5_gn_8_134640 Lactuca sativa HOM05D000159 ORTHO05D000148 1.2e-07 60.1 51 58.8
QL08p039703 Quercus lobata HOM05D000159 ORTHO05D000148 1.2e-07 60.1 48 62.5
Sed0026571 Sechium edule HOM05D000159 ORTHO05D000148 1.2e-07 60.1 36 75.0
ClCG07G002510 Citrullus lanatus HOM05D000159 ORTHO05D000148 1.6e-07 59.7 35 77.1
Atru.chr6.2956 Acer truncatum HOM05D000159 ORTHO05D000148 2.7e-07 58.9 36 69.4
Medtr2g014200 Medicago truncatula HOM05D000159 ORTHO05D000148 2.7e-07 58.9 49 59.2
PGR042G0872 Punica granatum HOM05D000159 ORTHO05D000148 2.7e-07 58.9 40 67.5
Oeu025373.2 Olea europaea HOM05D007843 ORTHO05D003639 3.5e-07 58.5 35 68.6
A04p26040 Brassica napus HOM05D000159 ORTHO05D000148 4.6e-07 58.2 45 60.0
Haze_13205 Corylus avellana HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 74.3
Duzib052G1134 Durio zibethinus HOM05D000159 ORTHO05D000148 4.6e-07 58.2 55 52.7
Eucgr.K01046 Eucalyptus grandis HOM05D000159 ORTHO05D000148 4.6e-07 58.2 36 66.7
Manes.13G144400 Manihot esculenta HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 68.6
Manes.13G145740 Manihot esculenta HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 68.6
Manes.13G145817 Manihot esculenta HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 68.6
Manes.13G145925 Manihot esculenta HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 68.6
Manes.13G146095 Manihot esculenta HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 68.6
Sabra07G0111900 Salix brachista HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 71.4
SalBow7G1406 Salvia bowleyana HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 74.3
SalBow7G2874 Salvia bowleyana HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 74.3
Sed0015783 Sechium edule HOM05D000159 ORTHO05D000148 4.6e-07 58.2 35 74.3
TWI38G1698 Tripterygium wilfordii HOM05D000159 ORTHO05D000148 4.6e-07 58.2 34 73.5
MSTRG.15870 Avicennia marina HOM05D000159 ORTHO05D000148 6.0e-07 57.8 43 62.8
Cpa.g.sc80.88 Carica papaya HOM05D000159 ORTHO05D000148 6.0e-07 57.8 58 55.2
HanXRQChr17g0541691 Helianthus annuus HOM05D000159 ORTHO05D000148 6.0e-07 57.8 36 66.7
COL.COLO4_05957 Corchorus olitorius HOM05D000159 ORTHO05D000148 7.8e-07 57.4 35 65.7
FAN16G2365 Fragaria x ananassa HOM05D000159 ORTHO05D000148 7.8e-07 57.4 53 52.8
Lalb_Chr19g0134151 Lupinus albus HOM05D000159 ORTHO05D000148 7.8e-07 57.4 65 50.8
Nitab4.5_0002330g0030 Nicotiana tabacum HOM05D000159 ORTHO05D000148 7.8e-07 57.4 59 47.5
Phvul.005G101900 Phaseolus vulgaris HOM05D000159 ORTHO05D000148 7.8e-07 57.4 55 52.7
Prupe.3G139800 Prunus persica HOM05D000159 ORTHO05D000148 7.8e-07 57.4 43 58.1
arahy.Tifrunner.gnm1.ann1.LT7EDZ Arachis hypogaea HOM05D000159 ORTHO05D000148 1.0e-06 57.0 45 60.0
Cfa014642 Carpinus fangiana HOM05D000159 ORTHO05D000148 1.0e-06 57.0 35 71.4
Sed0001992 Sechium edule HOM05D000159 ORTHO05D000148 1.0e-06 57.0 70 47.1
TAR626G0880 Trochodendron aralioides HOM05D000159 ORTHO05D000148 1.0e-06 57.0 33 75.8
TAR627G0666 Trochodendron aralioides HOM05D000159 ORTHO05D000148 1.0e-06 57.0 33 72.7
TAR627G0867 Trochodendron aralioides HOM05D000159 ORTHO05D000148 1.0e-06 57.0 33 72.7
FvH4_3g08880 Fragaria vesca HOM05D000159 ORTHO05D000148 1.3e-06 56.6 53 52.8
Lalb_Chr03g0030711 Lupinus albus HOM05D000159 ORTHO05D000148 1.3e-06 56.6 62 51.6
Potri.007G138800 Populus trichocarpa HOM05D000159 ORTHO05D000148 1.3e-06 56.6 35 68.6
TPR.G16326 Trifolium pratense HOM05D000159 ORTHO05D000148 1.3e-06 56.6 49 57.1
vmacro11882 Vaccinium macrocarpon HOM05D000159 ORTHO05D000148 1.3e-06 56.6 33 72.7
VMungo1080G0460 Vigna mungo HOM05D000159 ORTHO05D000148 1.3e-06 56.6 62 50.0
Aqoxy4G00720 Aquilegia oxysepala HOM05D000159 ORTHO05D000148 1.7e-06 56.2 33 69.7
BraA04t18106Z Brassica rapa HOM05D000159 ORTHO05D000148 1.7e-06 56.2 45 57.8
CSS0014484 Camellia sinensis var. sinensis HOM05D000159 ORTHO05D000148 1.7e-06 56.2 33 72.7
Ca_02831_v3 Cicer arietinum L. HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
Duzib192G0476 Durio zibethinus HOM05D000159 ORTHO05D000148 1.7e-06 56.2 53 52.8
FAN11G2610 Fragaria x ananassa HOM05D000159 ORTHO05D000148 1.7e-06 56.2 53 50.9
Glyma.06G238100 Glycine max HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
Glyma.12G162999 Glycine max HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
Lj3g0002686 Lotus japonicus HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
MBI02_g32445_MAGBIO Magnolia biondii HOM05D000159 ORTHO05D000148 1.7e-06 56.2 48 60.4
Thecc.07G094900 Theobroma cacao HOM05D000159 ORTHO05D000148 1.7e-06 56.2 57 54.4
TPR.G22536 Trifolium pratense HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
TWI39G1043 Tripterygium wilfordii HOM05D000159 ORTHO05D000148 1.7e-06 56.2 58 55.2
TAR624G0899 Trochodendron aralioides HOM05D000159 ORTHO05D000148 1.7e-06 56.2 58 55.2
VMungo1127G1424 Vigna mungo HOM05D000159 ORTHO05D000148 1.7e-06 56.2 34 70.6
arahy.Tifrunner.gnm1.ann1.B3PCVN Arachis hypogaea HOM05D000159 ORTHO05D000148 2.3e-06 55.8 45 57.8
BcaC02g07767 Brassica carinata HOM05D000159 ORTHO05D000148 2.3e-06 55.8 41 63.4
BolC4t27813H Brassica oleracea HOM05D000159 ORTHO05D000148 2.3e-06 55.8 41 63.4
Eucgr.F03303 Eucalyptus grandis HOM05D000159 ORTHO05D000148 2.3e-06 55.8 58 53.4
Gohir.D01G048500 Gossypium hirsutum HOM05D000159 ORTHO05D000148 2.3e-06 55.8 37 70.3
Gorai.002G068300 Gossypium raimondii HOM05D000159 ORTHO05D000148 2.3e-06 55.8 37 70.3
PSO541G0770 Papaver somniferum HOM05D000159 ORTHO05D000148 2.3e-06 55.8 33 66.7
PSO675G4132 Papaver somniferum HOM05D000159 ORTHO05D000148 2.3e-06 55.8 33 66.7
RcHm_v2.0_Chr2g0127621 Rosa chinensis HOM05D000159 ORTHO05D000148 2.3e-06 55.8 43 53.5
SGA_v2.0_scaffold70G23509 Striga asiatica HOM05D000159 ORTHO05D000148 2.3e-06 55.8 38 60.5
EL10Ac4g08220 Beta vulgaris HOM05D000159 ORTHO05D000148 3.0e-06 55.5 34 70.6
AUR62019452 Chenopodium quinoa HOM05D000159 ORTHO05D000148 3.0e-06 55.5 33 69.7
Gohir.A01G061900 Gossypium hirsutum HOM05D000159 ORTHO05D000148 3.0e-06 55.5 37 67.6
Thecc.06G183900 Theobroma cacao HOM05D000159 ORTHO05D000148 3.0e-06 55.5 33 69.7
Ah.02g130860 Amaranthus hybridus HOM05D000159 ORTHO05D000148 3.9e-06 55.1 64 48.4
A06p01170 Brassica napus HOM05D000159 ORTHO05D000148 3.9e-06 55.1 46 54.3
BraA06t23344Z Brassica rapa HOM05D000159 ORTHO05D000148 3.9e-06 55.1 46 54.3
Duzib213G0865 Durio zibethinus HOM05D000159 ORTHO05D000148 3.9e-06 55.1 57 54.4
Eucgr.E03260 Eucalyptus grandis HOM05D000159 ORTHO05D000148 3.9e-06 55.1 33 69.7
FAN21G3098 Fragaria x ananassa HOM05D000159 ORTHO05D000148 3.9e-06 55.1 34 70.6
Lalb_Chr07g0195671 Lupinus albus HOM05D000159 ORTHO05D000148 3.9e-06 55.1 51 49.0
Medtr4g088555 Medicago truncatula HOM05D000159 ORTHO05D000148 3.9e-06 55.1 48 52.1
Psat4g139840 Pisum sativum HOM05D000159 ORTHO05D000148 3.9e-06 55.1 34 67.6
QL08p022416 Quercus lobata HOM05D000159 ORTHO05D000148 3.9e-06 55.1 71 40.8
SalBow8G2583 Salvia bowleyana HOM05D000159 ORTHO05D000148 3.9e-06 55.1 69 47.8
SalBow8G4315 Salvia bowleyana HOM05D000159 ORTHO05D000148 3.9e-06 55.1 69 47.8
Sed0020080 Sechium edule HOM05D000159 ORTHO05D000148 3.9e-06 55.1 70 45.7
TPR.G16525 Trifolium pratense HOM05D000159 ORTHO05D000148 3.9e-06 55.1 71 46.5
HPP92_017549 Vanilla planifolia HOM05D000159 ORTHO05D000148 3.9e-06 55.1 33 69.7
Aa31sc652G40 Aethionema arabicum HOM05D000159 ORTHO05D000148 5.1e-06 54.7 58 53.4
Aa31sc652G90 Aethionema arabicum HOM05D000159 ORTHO05D000148 5.1e-06 54.7 58 53.4
Ca_18573_v3 Cicer arietinum L. HOM05D000159 ORTHO05D000148 5.1e-06 54.7 75 42.7
Cc05_g11850 Coffea canephora HOM05D000159 ORTHO05D000148 5.1e-06 54.7 33 69.7
Haze_09446 Corylus avellana HOM05D000159 ORTHO05D000148 5.1e-06 54.7 73 45.2
Dinv14930 Davidia involucrata HOM05D000159 ORTHO05D000148 5.1e-06 54.7 33 69.7
FvH4_3g19650 Fragaria vesca HOM05D000159 ORTHO05D000148 5.1e-06 54.7 39 64.1
FAN11G3094 Fragaria x ananassa HOM05D000159 ORTHO05D000148 5.1e-06 54.7 39 64.1
FAN16G0085 Fragaria x ananassa HOM05D000159 ORTHO05D000148 5.1e-06 54.7 39 64.1
Gohir.A13G146600 Gossypium hirsutum HOM05D000159 ORTHO05D000148 5.1e-06 54.7 34 67.6
Gohir.D13G151900 Gossypium hirsutum HOM05D000159 ORTHO05D000148 5.1e-06 54.7 34 67.6
Gorai.013G169800 Gossypium raimondii HOM05D000159 ORTHO05D000148 5.1e-06 54.7 34 67.6
Lj3g0002499 Lotus japonicus HOM05D000159 ORTHO05D000148 5.1e-06 54.7 52 57.7
MD11G1251800 Malus domestica HOM05D000159 ORTHO05D000148 5.1e-06 54.7 34 67.6
Medtr8g463140 Medicago truncatula HOM05D000159 ORTHO05D000148 5.1e-06 54.7 33 69.7
Phvul.011G164800 Phaseolus vulgaris HOM05D000159 ORTHO05D000148 5.1e-06 54.7 34 67.6
Psat5g096720 Pisum sativum HOM05D000159 ORTHO05D000148 5.1e-06 54.7 53 50.9
Rhsim04G0070000 Rhododendron simsii HOM05D000159 ORTHO05D000148 5.1e-06 54.7 38 68.4
TPR.G17775 Trifolium pratense HOM05D000159 ORTHO05D000148 5.1e-06 54.7 52 53.8
VMungo0540G1566 Vigna mungo HOM05D000159 ORTHO05D000148 5.1e-06 54.7 59 50.8
GSVIVG01021087001 Vitis vinifera HOM05D000159 ORTHO05D000148 5.1e-06 54.7 49 51.0
Carub.0004s1548 Capsella rubella HOM05D000159 ORTHO05D000148 6.6e-06 54.3 52 55.8
CDE02G3057 Ceratophyllum demersum HOM05D000159 ORTHO05D000148 6.6e-06 54.3 49 53.1
FvH4_6g26530 Fragaria vesca HOM05D000159 ORTHO05D000148 6.6e-06 54.3 41 53.7
FAN14G3654 Fragaria x ananassa HOM05D000159 ORTHO05D000148 6.6e-06 54.3 41 53.7
Lj4g0006856 Lotus japonicus HOM05D000159 ORTHO05D000148 6.6e-06 54.3 48 56.2
Psat1g203760 Pisum sativum HOM05D000159 ORTHO05D000148 6.6e-06 54.3 72 43.1
QL05p041622 Quercus lobata HOM05D000159 ORTHO05D000148 6.6e-06 54.3 33 69.7
SGA_v2.0_scaffold34G13942 Striga asiatica HOM05D000159 ORTHO05D000148 6.6e-06 54.3 64 46.9
GSVIVG01014302001 Vitis vinifera HOM05D000159 ORTHO05D000148 6.6e-06 54.3 32 71.9
arahy.Tifrunner.gnm1.ann1.79TY2T Arachis hypogaea HOM05D000159 ORTHO05D000148 8.6e-06 53.9 51 47.1
arahy.Tifrunner.gnm1.ann1.LL5J3P Arachis hypogaea HOM05D000159 ORTHO05D000148 8.6e-06 53.9 51 47.1
arahy.Tifrunner.gnm1.ann1.QGI1CH Arachis hypogaea HOM05D000159 ORTHO05D000148 8.6e-06 53.9 51 47.1
Ca_23120_v3 Cicer arietinum L. HOM05D000159 ORTHO05D000148 8.6e-06 53.9 51 49.0
Hma1.2p1_0208F.1_g088310 Hydrangea macrophylla HOM05D000159 ORTHO05D000148 8.6e-06 53.9 61 52.5
Lalb_Chr12g0206081 Lupinus albus HOM05D000159 ORTHO05D000148 8.6e-06 53.9 48 54.2
Rhsim06G0201200 Rhododendron simsii HOM05D000159 ORTHO05D000148 8.6e-06 53.9 33 69.7
Hund22851 Selenicereus undatus HOM05D000159 ORTHO05D000148 8.6e-06 53.9 34 67.6
PGSC0003DMG400034745 Solanum tuberosum HOM05D000159 ORTHO05D000148 8.6e-06 53.9 33 66.7
THA.LOC104818089 Tarenaya hassleriana HOM05D000159 ORTHO05D000148 8.6e-06 53.9 44 61.4


User provided reference genes

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