Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.4e-295 1018.8 511 100.0
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 4.9e-264 914.1 499 90.2
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.1e-263 912.9 499 90.0
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.3e-252 874.8 514 86.2
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.2e-249 866.3 506 86.6
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.6e-241 838.6 497 84.7
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 6.1e-190 667.9 522 65.7
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.0e-188 662.9 517 65.8
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 3.3e-188 662.1 517 67.1
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 4.1e-186 655.2 521 65.1
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.0e-184 650.6 498 64.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.6e-182 643.3 528 63.3
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 8.0e-182 641.0 521 63.5
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 2.0e-180 636.3 521 64.3
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-178 630.2 514 62.6
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.1e-178 629.0 510 64.3
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 3.5e-177 625.5 520 63.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.2e-175 619.0 523 61.6
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.2e-175 618.6 527 61.7
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 7.2e-175 617.8 519 62.8
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 9.5e-175 617.5 529 61.6
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.6e-174 616.7 515 62.1
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 2.1e-174 616.3 557 57.5
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 4.7e-174 615.1 524 61.3
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 8.0e-174 614.4 528 60.8
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.6e-172 609.4 525 60.8
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 7.5e-172 607.8 515 60.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.3e-171 607.1 536 59.0
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.7e-171 606.7 496 62.1
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.8e-171 605.9 515 61.7
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 4.9e-171 605.1 524 61.3
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.4e-170 602.8 494 61.9
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 2.4e-170 602.8 531 60.3
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.1e-170 602.4 523 60.0
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 4.5e-169 598.6 490 61.6
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 1.3e-168 597.0 513 60.6
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.9e-168 595.9 520 59.4
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.9e-168 595.9 523 59.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 8.6e-168 594.3 494 61.5
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 9.5e-167 590.9 532 58.5
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.7e-166 588.6 522 58.8
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.4e-165 587.0 517 59.6
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 4.0e-165 585.5 465 61.3
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 6.4e-163 578.2 507 59.8
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-162 577.4 503 59.0
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 5.4e-162 575.1 514 58.8
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 1.3e-160 570.5 522 58.0
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 2.3e-160 569.7 521 57.2
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 6.6e-160 568.2 521 56.8
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 8.6e-160 567.8 513 58.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 1.1e-159 567.4 528 58.0
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.9e-159 566.6 517 57.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 3.3e-159 565.8 531 57.3
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 5.6e-159 565.1 517 57.4
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 9.5e-159 564.3 517 57.4
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.1e-158 563.1 516 56.8
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.6e-158 562.4 528 57.6
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 3.6e-158 562.4 515 58.4
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 6.2e-158 561.6 525 58.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 6.2e-158 561.6 525 58.3
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.4e-157 560.5 521 57.2
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 2.3e-157 559.7 523 58.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.2e-156 557.4 532 56.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 1.5e-156 557.0 503 59.0
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-156 557.0 518 54.8
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.0e-156 556.6 526 57.0
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 3.4e-156 555.8 496 61.5
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 9.8e-156 554.3 506 56.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 2.2e-155 553.1 501 58.3
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 6.4e-155 551.6 526 57.2
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 1.1e-154 550.8 526 57.2
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.1e-154 550.8 495 58.2
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 1.1e-154 550.8 528 57.2
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.4e-154 550.4 524 57.3
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 1.9e-154 550.1 525 57.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 3.2e-154 549.3 493 57.4
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 2.7e-153 546.2 519 57.0
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 7.8e-153 544.7 520 57.1
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.0e-152 544.3 517 56.1
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 1.0e-152 544.3 493 59.2
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.3e-152 543.9 486 58.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 1.3e-152 543.9 514 58.2
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.7e-152 543.5 507 57.4
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 3.9e-152 542.3 450 63.6
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.1e-151 540.8 519 57.8
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-151 540.4 487 57.1
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.3e-151 538.9 509 57.6
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.6e-151 538.5 493 57.8
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-149 533.9 525 54.5
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 4.0e-149 532.3 500 57.4
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.0e-148 530.0 505 54.3
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 7.5e-148 528.1 496 55.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.3e-147 527.3 546 52.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.2e-147 526.6 488 55.9
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 3.2e-146 522.7 482 57.5
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 9.2e-146 521.2 524 54.0
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.3e-144 517.3 465 58.1
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 6.6e-144 515.0 493 55.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.5e-143 513.8 475 56.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 9.5e-143 511.1 504 54.8
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 2.1e-142 510.0 520 55.4
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.2e-140 504.2 518 52.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 4.6e-137 492.3 466 57.3
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.3e-136 490.7 513 50.3
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 3.9e-136 489.2 480 54.8
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.1e-135 487.6 595 47.6
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-134 484.2 469 53.1
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 2.8e-134 483.0 518 48.6
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 6.2e-134 481.9 469 52.7
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.1e-133 479.6 527 51.6
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 4.0e-133 479.2 526 53.4
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.9e-133 478.4 491 55.0
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.9e-130 470.3 477 52.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.3e-125 452.2 443 54.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.9e-123 446.4 486 52.3
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.1e-119 434.5 430 55.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 6.2e-118 428.7 528 46.8
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 4.0e-117 426.0 543 42.9
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.0e-116 423.7 446 53.8
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.3e-115 421.0 522 43.7
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.9e-115 419.1 558 42.8
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.0e-113 412.1 562 42.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.0e-113 412.1 562 42.3
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.2e-110 402.1 528 41.5
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 4.0e-109 399.4 541 41.2
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 1.9e-103 380.6 498 43.4
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.1e-101 374.8 325 59.4
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 4.1e-101 372.9 316 62.0
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.9e-95 354.0 422 50.9
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 2.6e-92 343.6 527 38.0
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 3.9e-88 329.7 361 48.2
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-76 290.8 584 34.1
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.5e-74 283.9 582 34.2
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 4.0e-72 276.6 686 30.3
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 9.7e-71 271.9 164 75.6
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.8e-70 270.4 179 67.0
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.7e-65 253.1 424 37.0
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 1.0e-59 235.3 371 43.9
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 9.2e-53 212.2 258 47.3
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.0e-47 194.5 192 49.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 7.0e-45 186.0 117 76.1
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 8.0e-41 172.6 130 67.7
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.3e-40 171.0 273 40.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 2.7e-36 157.5 99 68.7
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.4e-31 140.2 128 58.6
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.9e-30 137.5 152 52.0
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 8.3e-30 136.0 130 57.7
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.1e-29 135.6 142 55.6
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.3e-26 124.0 94 64.9
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 2.4e-24 117.9 110 56.4
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 2.6e-23 114.4 181 35.9
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 4.9e-22 110.2 166 34.9
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 6.2e-17 93.2 68 60.3
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 3.1e-16 90.9 102 43.1
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.6e-09 68.6 68 48.5
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.2e-07 62.4 39 64.1
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 2.9e-06 57.8 116 37.1


User provided reference genes

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