Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 8.0e-55 216.9 110 100.0
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 9.2e-19 97.1 50 94.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.6e-18 94.7 49 95.9
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.6e-18 94.7 49 95.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.0e-17 93.6 49 93.9
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.0e-17 92.0 49 91.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 8.7e-17 90.5 49 89.8
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.5e-16 89.0 49 91.8
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 9.6e-16 87.0 49 85.7
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.2e-15 86.7 50 84.0
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 2.8e-15 85.5 49 85.7
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.1e-14 83.6 43 97.7
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.4e-14 83.2 47 87.2
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.8e-14 82.8 49 85.7
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.8e-14 82.8 48 85.4
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 1.8e-14 82.8 48 85.4
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.0e-14 81.6 48 83.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 6.9e-14 80.9 50 76.0
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.0e-13 79.3 50 80.0
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 2.6e-13 79.0 49 79.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 2.6e-13 79.0 49 79.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.6e-13 79.0 49 81.6
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 3.4e-13 78.6 45 86.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 3.4e-13 78.6 46 82.6
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 4.4e-13 78.2 49 81.6
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 5.8e-13 77.8 49 81.6
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 5.8e-13 77.8 49 81.6
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 5.8e-13 77.8 49 81.6
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 7.6e-13 77.4 47 80.9
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 7.6e-13 77.4 49 79.6
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 9.9e-13 77.0 49 81.6
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 1.3e-12 76.6 49 79.6
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 1.3e-12 76.6 49 79.6
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 1.3e-12 76.6 49 81.6
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.7e-12 76.3 50 76.0
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.7e-12 76.3 49 79.6
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.7e-12 76.3 48 83.3
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-12 76.3 50 78.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-12 76.3 50 78.0
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.9e-12 75.5 50 80.0
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 75.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 75.5
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 77.6
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 79.6
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 75.5
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 75.5
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.8e-12 75.1 49 73.5
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 4.9e-12 74.7 49 79.6
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-12 74.7 49 75.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-12 74.7 49 75.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.9e-12 74.7 49 75.5
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 8.4e-12 73.9 46 73.9
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 8.4e-12 73.9 45 77.8
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.4e-11 73.2 48 79.2
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.4e-11 73.2 49 77.6
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.4e-11 73.2 50 74.0
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.9e-11 72.8 43 86.0
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.9e-11 72.8 50 72.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.4e-11 72.4 44 79.5
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 3.2e-11 72.0 49 77.6
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.2e-11 71.6 48 77.1
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 5.4e-11 71.2 49 77.6
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.1e-11 70.9 49 75.5
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 7.1e-11 70.9 49 75.5
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 7.1e-11 70.9 48 77.1
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 7.1e-11 70.9 49 75.5
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 7.1e-11 70.9 50 72.0
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 7.1e-11 70.9 49 73.5
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.2e-10 70.1 49 73.5
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.2e-10 70.1 49 73.5
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.2e-10 70.1 45 75.6
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.6e-10 69.7 45 75.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.6e-10 69.7 49 77.6
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.6e-10 69.7 45 73.3
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.6e-10 69.7 43 79.1
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.6e-10 69.7 48 64.6
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 1.6e-10 69.7 46 71.7
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 2.1e-10 69.3 49 75.5
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.1e-10 69.3 50 70.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.5e-10 68.6 49 73.5
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.5e-10 68.6 49 75.5
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.5e-10 68.6 49 75.5
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 4.6e-10 68.2 44 72.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.8e-10 67.4 49 75.5
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.0e-09 67.0 45 71.1
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.0e-09 67.0 49 71.4
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.0e-09 67.0 49 71.4
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-09 66.6 45 73.3
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-09 66.2 46 71.7
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 2.3e-09 65.9 45 71.1
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.0e-09 65.5 45 71.1
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 3.0e-09 65.5 49 75.5
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.0e-09 65.5 48 75.0
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 3.9e-09 65.1 47 68.1
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 3.9e-09 65.1 43 74.4
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 3.9e-09 65.1 50 70.0
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.1e-09 64.7 43 74.4
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.1e-09 64.7 43 74.4
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.1e-09 64.7 43 74.4
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.1e-09 64.7 43 74.4
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 6.6e-09 64.3 49 73.5
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 6.6e-09 64.3 49 73.5
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 6.6e-09 64.3 49 73.5
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 8.7e-09 63.9 49 73.5
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 8.7e-09 63.9 45 68.9
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 8.7e-09 63.9 39 79.5
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 8.7e-09 63.9 39 79.5
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 8.7e-09 63.9 45 68.9
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 8.7e-09 63.9 56 66.1
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 1.1e-08 63.5 43 72.1
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-08 63.5 43 72.1
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.1e-08 63.5 49 69.4
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.5e-08 63.2 48 68.8
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.5e-08 63.2 49 69.4
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.9e-08 62.8 44 68.2
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.9e-08 62.8 51 72.5
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-08 62.4 49 61.2
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.3e-08 62.0 49 61.2
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 4.3e-08 61.6 49 61.2
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.6e-08 61.2 50 64.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 5.6e-08 61.2 42 76.2
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 5.6e-08 61.2 49 69.4
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 5.6e-08 61.2 49 63.3
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 7.3e-08 60.8 85 43.5
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 7.3e-08 60.8 51 66.7
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 7.3e-08 60.8 49 67.3
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 7.3e-08 60.8 42 69.0
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 9.6e-08 60.5 52 63.5
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.3e-07 60.1 45 66.7
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.3e-07 60.1 46 67.4
Gohir.A12G273400 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.3e-07 60.1 37 78.4
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.3e-07 60.1 47 61.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.6e-07 59.7 51 64.7
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 2.1e-07 59.3 69 52.2
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.6e-07 58.5 50 68.0
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.6e-07 58.5 50 68.0
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.6e-07 58.5 50 68.0
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.6e-07 58.5 50 68.0
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 3.6e-07 58.5 47 68.1
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 3.6e-07 58.5 55 63.6
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.6e-07 58.5 43 69.8
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 4.8e-07 58.2 43 65.1
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 6.2e-07 57.8 39 71.8
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 8.1e-07 57.4 45 66.7
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 8.1e-07 57.4 44 68.2
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 8.1e-07 57.4 45 64.4
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.1e-06 57.0 47 68.1
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 2.4e-06 55.8 52 65.4
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 4.0e-06 55.1 38 71.1
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 6.9e-06 54.3 41 70.7
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 9.0e-06 53.9 38 68.4


User provided reference genes

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