Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 4.6e-288 993.8 488 100.0
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.7e-280 968.0 488 96.7
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 6.7e-279 963.4 487 96.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.5e-278 961.4 487 96.5
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 2.5e-278 961.4 487 96.9
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 2.5e-278 961.4 487 96.9
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.1e-273 946.0 482 94.4
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.9e-266 921.4 485 91.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.5e-265 919.1 486 91.8
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 5.5e-265 917.1 488 90.8
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 9.4e-265 916.4 487 91.8
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.6e-264 915.6 485 90.7
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 3.6e-264 914.4 486 91.8
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 3.6e-264 914.4 486 91.6
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 4.7e-264 914.1 485 90.9
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 6.1e-264 913.7 487 91.4
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 8.0e-264 913.3 485 90.5
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 8.0e-264 913.3 487 90.8
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.0e-263 912.9 485 90.5
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-263 912.5 485 91.5
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.4e-263 912.5 486 91.4
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-263 912.1 485 88.9
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-263 912.1 485 90.3
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-263 912.1 485 90.3
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 2.3e-263 911.8 483 90.7
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.0e-263 911.4 485 91.5
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.9e-263 911.0 487 91.0
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.2e-263 910.6 485 90.1
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 8.8e-263 909.8 482 90.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 8.8e-263 909.8 485 89.7
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-262 909.4 485 91.3
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.1e-262 909.4 485 91.3
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.1e-262 909.4 485 91.3
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.1e-262 909.4 487 91.2
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.5e-262 909.1 485 90.9
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 1.5e-262 909.1 483 90.3
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-262 909.1 487 90.8
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 2.0e-262 908.7 485 91.1
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.6e-262 908.3 485 91.3
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 2.6e-262 908.3 487 90.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.6e-262 908.3 487 91.0
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 4.4e-262 907.5 485 90.7
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.4e-262 907.5 485 89.3
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 5.7e-262 907.1 485 89.7
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 7.4e-262 906.7 485 90.9
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 7.4e-262 906.7 485 91.3
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 7.4e-262 906.7 484 90.3
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.3e-261 906.0 481 90.4
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.7e-261 905.6 485 90.3
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.7e-261 905.6 480 90.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 1.7e-261 905.6 480 91.0
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 2.2e-261 905.2 485 91.1
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 2.8e-261 904.8 485 89.7
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 2.8e-261 904.8 487 89.7
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.8e-261 904.8 485 90.1
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.7e-261 904.4 485 90.9
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 3.7e-261 904.4 487 91.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.7e-261 904.4 483 90.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.8e-261 904.0 485 89.9
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 4.8e-261 904.0 485 90.1
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 4.8e-261 904.0 485 90.7
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 8.2e-261 903.3 485 88.9
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.4e-260 902.5 480 90.0
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 1.8e-260 902.1 485 90.7
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 2.4e-260 901.7 483 90.9
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 3.1e-260 901.4 479 91.0
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.1e-260 901.4 486 89.7
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.3e-260 900.6 485 90.5
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 5.3e-260 900.6 481 90.2
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 7.0e-260 900.2 485 90.5
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 9.1e-260 899.8 484 91.1
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 1.2e-259 899.4 480 90.2
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 2.0e-259 898.7 478 90.8
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 2.0e-259 898.7 486 88.9
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.6e-259 898.3 480 90.2
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.6e-259 898.3 486 89.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 4.5e-259 897.5 482 90.2
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 5.9e-259 897.1 480 90.0
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 7.7e-259 896.7 485 89.1
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 7.7e-259 896.7 483 89.4
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 7.7e-259 896.7 485 90.7
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 7.7e-259 896.7 485 89.7
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.0e-258 896.3 485 88.9
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.0e-258 896.3 485 89.1
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.7e-258 895.6 485 89.3
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 2.9e-258 894.8 484 89.5
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.9e-258 894.8 485 89.1
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 2.9e-258 894.8 490 89.4
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 3.8e-258 894.4 481 90.2
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 1.5e-257 892.5 489 89.4
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.9e-257 892.1 485 88.5
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.5e-257 891.7 483 89.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.5e-257 891.7 485 87.4
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 3.2e-257 891.3 478 89.5
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 4.2e-257 891.0 484 88.8
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 4.2e-257 891.0 486 88.7
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 7.2e-257 890.2 472 90.5
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 9.4e-257 889.8 473 90.9
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 1.2e-256 889.4 485 89.1
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.6e-256 887.9 487 88.7
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-254 881.7 490 87.8
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 9.8e-254 879.8 490 87.8
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 3.7e-253 877.9 487 88.3
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.4e-252 875.2 459 92.4
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 4.1e-252 874.4 452 91.6
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 2.0e-251 872.1 464 90.9
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 4.5e-251 870.9 460 91.1
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 6.1e-248 860.5 483 87.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.0e-247 858.2 457 89.3
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.3e-245 852.8 482 86.1
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.1e-244 849.7 484 83.9
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.0e-243 845.5 481 85.2
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.0e-242 843.2 437 89.7
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 2.5e-241 838.6 434 89.2
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 7.5e-238 827.0 438 88.4
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.3e-237 826.2 454 85.0
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 1.1e-236 823.2 409 94.4
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.0e-234 816.6 407 94.3
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 6.6e-234 813.9 407 93.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 6.6e-234 813.9 403 94.5
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.9e-233 812.4 402 94.5
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.2e-229 798.9 435 86.0
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.8e-224 781.9 486 79.8
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 4.9e-221 771.2 427 82.9
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.1e-220 770.0 386 93.5
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 4.6e-219 764.6 423 83.2
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 5.1e-218 761.1 420 82.1
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 5.1e-210 734.6 392 89.0
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.1e-207 725.3 392 89.5
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 8.4e-205 717.2 480 75.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 4.8e-192 674.9 368 89.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.0e-187 657.9 346 89.3
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 8.7e-186 654.1 395 75.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.6e-179 631.7 485 69.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.7e-173 613.2 317 91.2
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-169 600.5 485 66.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.3e-169 598.6 485 66.6
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 3.1e-167 592.4 331 87.9
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.3e-167 591.7 485 66.2
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.4e-145 518.8 279 87.1
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 6.1e-139 498.4 351 71.2
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 4.9e-128 462.2 278 75.9
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.7e-112 409.5 203 94.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.8e-99 366.7 177 94.9
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.8e-96 356.3 488 46.5
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.4e-95 354.4 221 77.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.1e-92 344.7 174 94.3
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 6.4e-88 328.9 170 89.4
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 4.0e-74 283.1 146 89.0
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 3.9e-69 266.5 162 85.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.4e-66 257.3 146 84.2
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.2e-65 255.0 129 93.8
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 6.5e-64 249.2 127 89.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.1e-58 230.3 146 81.5
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.7e-54 217.2 259 44.4
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.8e-51 206.5 126 84.1
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 6.3e-51 206.1 100 94.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-47 195.3 102 88.2
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.6e-38 164.9 107 76.6
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 8.8e-37 159.1 102 77.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.6e-33 148.3 76 92.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.6e-33 148.3 76 92.1
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 2.6e-28 131.0 197 37.1
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 2.2e-27 127.9 68 91.2
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.2e-27 125.9 70 84.3
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.3e-26 123.2 65 87.7
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.3e-26 123.2 65 87.7
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.7e-25 120.9 65 86.2
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-23 114.8 65 81.5
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.2e-23 113.6 65 80.0
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 8.0e-22 109.4 65 80.0
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 8.0e-22 109.4 67 71.6
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.7e-19 101.7 66 69.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 7.7e-17 92.8 48 87.5
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.3e-16 92.0 62 90.3
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 4.2e-15 87.0 168 37.5
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.0e-13 80.9 71 57.7
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.0e-13 80.9 62 72.6
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 5.2e-13 80.1 72 58.3
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.2e-12 79.0 72 58.3
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 2.0e-09 68.2 61 57.4


User provided reference genes

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