Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 5.7e-22 106.7 54 100.0
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.0e-18 95.9 54 88.9
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 6.1e-16 86.7 50 88.0
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 2.6e-14 81.3 54 68.5
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.4e-14 80.5 54 74.1
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 72.2
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 72.2
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.3e-13 79.0 54 72.2
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 8.3e-13 76.3 52 67.3
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 7.0e-12 73.2 54 68.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 7.0e-12 73.2 54 68.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 9.2e-12 72.8 54 61.1
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 1.2e-11 72.4 54 68.5
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.6e-11 72.0 54 64.8
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 66.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 3.5e-11 70.9 53 69.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 5.9e-11 70.1 54 63.0
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.3e-10 68.9 54 61.1
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-10 68.2 52 69.2
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 2.3e-10 68.2 52 69.2
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 61.1
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 3.9e-10 67.4 52 67.3
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 3.9e-10 67.4 54 63.0
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 6.6e-10 66.6 52 67.3
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 63.0
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 64.8
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.1e-09 65.9 52 65.4
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 1.5e-09 65.5 52 65.4
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.9e-09 65.1 52 65.4
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.5e-09 64.7 52 65.4
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 2.5e-09 64.7 52 65.4
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.5e-09 64.7 52 65.4
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 2.5e-09 64.7 52 65.4
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 2.5e-09 64.7 49 61.2
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.5e-09 64.7 49 61.2
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.5e-09 64.7 49 61.2
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.5e-09 64.7 54 59.3
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 3.3e-09 64.3 52 63.5
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 3.3e-09 64.3 52 63.5
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 3.3e-09 64.3 52 63.5
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 4.3e-09 63.9 52 63.5
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 5.6e-09 63.5 52 63.5
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 5.6e-09 63.5 52 63.5
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 7.3e-09 63.2 54 61.1
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 7.3e-09 63.2 54 57.4
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 7.3e-09 63.2 50 62.0
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 9.5e-09 62.8 54 59.3
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.2e-08 62.4 53 56.6
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.1e-08 61.6 52 63.5
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 2.1e-08 61.6 54 59.3
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.1e-08 61.6 54 57.4
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 2.8e-08 61.2 53 56.6
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.6e-08 60.8 52 59.6
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 6.1e-08 60.1 54 57.4
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 1.0e-07 59.3 54 55.6
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.0e-07 59.3 46 63.0
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 1.4e-07 58.9 52 59.6
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.4e-07 58.9 54 57.4
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.4e-07 58.9 54 57.4
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.8e-07 58.5 48 56.2
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 1.8e-07 58.5 49 55.1
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 2.3e-07 58.2 53 56.6
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 3.1e-07 57.8 54 55.6
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 8.9e-07 56.2 48 58.3
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 1.2e-06 55.8 48 56.2
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 2.0e-06 55.1 48 60.4
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.0e-06 55.1 49 55.1
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 9.8e-06 52.8 41 61.0


User provided reference genes

Program Settings