Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 1.2e-88 329.7 157 100.0
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 6.2e-85 317.4 157 95.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.8e-84 315.8 156 94.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.4e-81 305.4 149 96.0
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.4e-81 305.4 149 96.0
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.0e-79 300.1 157 88.5
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 5.6e-78 294.3 152 87.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 2.4e-76 288.9 154 86.4
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 3.1e-76 288.5 154 86.4
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 3.1e-76 288.5 154 86.4
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.1e-76 288.5 156 85.3
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 9.9e-75 283.5 154 85.1
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 1.3e-74 283.1 154 83.1
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 4.9e-74 281.2 154 84.4
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 6.4e-74 280.8 149 85.2
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.4e-73 279.6 151 82.8
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.9e-73 279.3 151 82.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 2.4e-73 278.9 154 82.5
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 3.2e-73 278.5 153 83.7
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 1.2e-72 276.6 154 83.8
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.6e-72 276.2 154 83.8
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 2.1e-72 275.8 154 81.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.6e-72 274.6 147 87.1
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 4.6e-72 274.6 154 83.1
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.0e-72 274.2 154 83.1
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 7.9e-72 273.9 154 81.8
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.8e-71 272.7 154 79.2
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.8e-71 272.7 153 79.7
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 3.0e-71 271.9 153 79.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 3.0e-71 271.9 150 82.7
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 5.1e-71 271.2 152 81.6
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 6.7e-71 270.8 154 81.8
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.9e-70 269.2 154 80.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 4.3e-70 268.1 145 83.4
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 4.3e-70 268.1 154 81.2
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.8e-69 265.4 154 80.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 2.8e-69 265.4 154 78.6
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.7e-69 265.0 154 78.6
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 8.2e-69 263.8 146 84.2
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.4e-68 263.1 154 79.9
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 5.3e-68 261.2 154 76.6
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 9.0e-68 260.4 153 79.7
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 1.5e-67 259.6 154 76.6
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.0e-67 259.2 144 84.0
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.6e-67 258.8 149 79.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 4.5e-67 258.1 154 75.3
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 1.0e-66 256.9 141 83.7
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.0e-66 256.9 152 76.3
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.3e-66 256.5 139 84.9
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.3e-66 256.5 149 79.2
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 1.3e-66 256.5 147 78.2
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 2.2e-66 255.8 141 83.0
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.2e-66 255.8 154 76.0
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 2.2e-66 255.8 154 75.3
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 2.2e-66 255.8 141 82.3
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.9e-66 255.4 154 76.0
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.8e-66 255.0 154 74.7
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.9e-66 254.6 154 75.3
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 6.5e-66 254.2 154 75.3
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.1e-65 253.4 154 76.6
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 1.9e-65 252.7 154 75.3
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 1.9e-65 252.7 154 75.3
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.5e-65 252.3 154 74.0
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 3.2e-65 251.9 154 73.4
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 3.2e-65 251.9 154 73.4
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.2e-65 251.9 143 79.7
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 3.2e-65 251.9 144 79.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 4.2e-65 251.5 154 75.3
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 4.2e-65 251.5 154 73.4
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.2e-64 250.0 154 74.0
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-64 250.0 152 73.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-64 250.0 152 73.7
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.2e-64 250.0 154 72.1
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.5e-64 248.4 146 77.4
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 3.5e-64 248.4 154 72.7
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 3.5e-64 248.4 154 72.1
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 3.5e-64 248.4 156 77.6
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 7.9e-64 247.3 149 75.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-63 246.5 152 72.4
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.3e-63 246.5 154 72.1
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.3e-63 246.5 154 71.4
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 2.3e-63 245.7 154 74.0
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 3.9e-63 245.0 152 72.4
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 5.1e-63 244.6 150 75.3
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-63 244.2 143 77.6
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-63 244.2 143 77.6
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-63 244.2 143 77.6
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-62 243.4 143 77.6
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.9e-62 242.7 153 71.9
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.5e-62 242.3 144 75.7
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 9.7e-62 240.4 149 73.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 9.7e-62 240.4 149 73.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.6e-61 239.6 142 76.1
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.6e-61 239.6 142 75.4
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.8e-60 236.1 143 74.1
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 1.8e-60 236.1 148 71.6
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 2.4e-60 235.7 143 74.1
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 5.3e-60 234.6 157 70.1
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 5.3e-60 234.6 143 74.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 6.9e-60 234.2 155 68.4
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 2.6e-59 232.3 142 73.9
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.4e-59 231.9 139 74.8
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 5.9e-59 231.1 144 73.6
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 7.6e-59 230.7 124 87.1
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 1.0e-58 230.3 151 70.9
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.0e-58 230.3 143 72.7
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 2.2e-58 229.2 154 67.5
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 3.2e-57 225.3 152 67.8
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.2e-57 225.3 136 73.5
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 4.2e-57 224.9 142 71.1
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 6.1e-56 221.1 155 67.1
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.3e-55 219.9 153 70.6
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.8e-55 219.5 154 66.2
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 5.1e-55 218.0 143 67.8
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 9.4e-49 197.2 109 83.5
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 2.3e-47 192.6 154 61.7
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 1.1e-46 190.3 153 62.7
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.4e-44 182.6 154 53.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 5.3e-44 181.4 154 53.9
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 5.0e-42 174.9 123 65.0
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.2e-41 171.0 129 61.2
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 3.6e-40 168.7 154 59.1
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 2.6e-38 162.5 123 61.8
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 5.7e-38 161.4 150 54.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 7.4e-38 161.0 103 72.8
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.4e-36 156.0 155 51.6
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 9.1e-36 154.1 128 57.8
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 2.2e-34 149.4 155 49.7
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.9e-33 146.4 154 50.0
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 1.8e-31 139.8 138 55.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.3e-31 139.4 167 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.0e-31 138.7 167 49.7
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.0e-30 136.3 90 72.2
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.0e-30 136.3 156 44.9
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.6e-30 136.0 155 47.1
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.0e-26 121.7 67 86.6
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 1.7e-21 106.7 130 43.1
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 8.0e-16 87.8 62 64.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 4.9e-13 78.6 53 67.9
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 1.8e-12 76.6 120 37.5
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 5.9e-11 71.6 62 59.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.6e-10 67.8 58 55.2
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.3e-09 65.9 48 60.4
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 6.8e-07 58.2 43 62.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.2e-06 57.4 46 56.5


User provided reference genes

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