Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 1.2e-305 1052.4 524 100.0
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.1e-258 894.8 484 91.7
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.3e-256 889.4 484 91.5
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.1e-254 880.6 484 90.5
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.0e-253 879.8 484 91.1
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.4e-252 874.4 484 90.3
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 6.2e-222 774.2 484 78.1
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.4e-218 761.1 484 77.5
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 2.1e-217 759.2 495 74.9
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 8.7e-216 753.8 487 76.4
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 2.5e-215 752.3 491 76.0
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 5.6e-215 751.1 495 74.3
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.6e-214 748.4 487 75.2
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 4.8e-214 748.0 485 76.1
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 8.1e-214 747.3 485 75.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.4e-213 745.7 487 76.6
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 2.4e-213 745.7 487 74.7
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 3.1e-213 745.3 485 75.9
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.4e-212 741.9 492 75.4
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 5.8e-212 741.1 490 76.1
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 1.3e-211 740.0 488 74.8
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 3.8e-211 738.4 485 75.5
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 8.4e-211 737.3 486 75.7
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 8.4e-211 737.3 489 74.6
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 4.2e-210 734.9 487 75.6
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 5.4e-210 734.6 501 72.7
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 9.3e-210 733.8 488 74.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.6e-209 733.0 533 69.2
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 2.1e-209 732.6 486 74.3
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 3.5e-209 731.9 487 74.3
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 4.6e-209 731.5 426 80.5
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 1.8e-208 729.6 489 73.2
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 3.9e-208 728.4 488 73.6
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.1e-207 726.9 488 73.6
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.5e-207 726.5 485 74.2
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 1.9e-207 726.1 492 73.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.5e-207 725.7 484 74.6
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 5.6e-207 724.5 451 77.2
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 1.6e-206 723.0 525 69.1
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.6e-206 723.0 494 73.3
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 1.4e-205 719.9 487 74.5
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.0e-204 716.1 513 70.6
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 3.4e-204 715.3 449 75.3
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 3.4e-204 715.3 425 77.6
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 5.8e-204 714.5 487 72.9
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 9.9e-204 713.8 425 77.6
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 2.9e-203 712.2 458 76.4
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.8e-203 711.8 491 72.7
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 8.4e-203 710.7 426 77.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 2.4e-202 709.1 462 74.9
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.4e-202 709.1 502 70.7
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 5.5e-202 708.0 466 73.8
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 5.5e-202 708.0 520 68.8
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 5.5e-202 708.0 465 74.2
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 7.1e-202 707.6 481 70.1
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 9.3e-202 707.2 455 74.1
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.2e-201 706.8 461 72.9
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.1e-201 706.1 488 73.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 7.9e-201 704.1 431 77.0
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.0e-200 703.7 486 71.2
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 1.3e-200 703.4 432 76.6
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 5.1e-200 701.4 492 71.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.5e-199 699.9 493 72.4
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 4.3e-199 698.4 486 70.2
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 9.6e-199 697.2 432 74.8
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.3e-198 696.8 487 70.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.7e-198 695.3 425 77.2
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 8.1e-198 694.1 482 70.3
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.4e-197 693.3 489 69.5
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.1e-197 692.2 423 76.8
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 4.0e-197 691.8 486 69.5
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 4.0e-197 691.8 486 70.2
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 5.3e-197 691.4 491 70.7
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.2e-196 690.3 485 70.1
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-196 690.3 485 70.1
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 5.8e-196 688.0 487 69.4
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 7.6e-196 687.6 437 75.5
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.7e-195 686.4 482 70.7
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 6.5e-195 684.5 494 68.8
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.1e-194 683.7 445 74.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.4e-194 683.3 486 69.8
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.4e-194 683.3 486 69.8
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 6.0e-193 677.9 456 74.8
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.0e-192 677.2 424 74.1
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 2.1e-190 669.5 435 73.8
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 2.4e-189 666.0 401 77.3
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 4.1e-189 665.2 403 77.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 3.4e-188 662.1 413 76.0
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 5.0e-187 658.3 390 81.8
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.4e-186 656.8 464 70.5
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.5e-183 646.7 461 68.3
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 2.5e-183 646.0 457 71.8
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 9.7e-183 644.0 378 80.4
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.6e-180 636.0 542 62.0
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 5.9e-180 634.8 424 71.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 6.1e-177 624.8 488 67.2
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 2.3e-176 622.9 378 78.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.1e-173 612.5 410 71.5
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 8.5e-171 604.4 477 64.8
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 1.9e-170 603.2 394 73.1
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 3.6e-169 599.0 450 65.1
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 5.2e-168 595.1 440 66.1
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 3.3e-167 592.4 491 62.5
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 1.2e-164 583.9 475 63.6
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 1.0e-160 570.9 341 78.0
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.4e-160 570.5 378 74.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 9.7e-159 564.3 497 56.5
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 8.8e-152 541.2 403 66.0
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 4.5e-148 528.9 378 69.0
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 5.0e-147 525.4 470 57.2
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 6.8e-144 515.0 470 56.2
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.3e-142 510.8 326 75.8
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.4e-117 427.6 256 78.1
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 3.9e-115 419.5 391 55.0
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.3e-114 416.0 297 68.0
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.3e-114 416.0 297 68.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 2.4e-109 400.2 348 57.8
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 3.1e-104 383.3 299 63.5
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 1.7e-99 367.5 285 63.5
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.3e-98 363.2 264 67.4
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.6e-98 362.5 270 66.7
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.3e-96 355.9 294 61.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 5.3e-88 329.3 383 45.4
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.8e-86 323.2 240 70.8
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.5e-85 319.3 215 70.2
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 4.6e-76 289.7 331 45.9
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 9.3e-69 265.4 252 55.6
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 3.0e-67 260.4 580 32.2
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.4e-51 208.4 459 32.7
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 7.2e-45 186.0 110 77.3
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 1.4e-40 171.8 150 64.0
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.9e-38 164.1 112 67.9
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 4.1e-32 143.7 90 80.0
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 1.6e-28 131.7 114 54.4
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.5e-21 108.6 74 71.6
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.6e-20 105.1 60 73.3
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 4.4e-18 97.1 92 54.3
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 3.7e-17 94.0 70 64.3
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 6.4e-17 93.2 69 63.8
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 6.4e-17 93.2 69 63.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 6.4e-17 93.2 53 75.5
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 8.3e-17 92.8 68 64.7
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 8.3e-17 92.8 69 63.8
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 8.3e-17 92.8 69 63.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 8.3e-17 92.8 69 63.8
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.1e-16 92.4 68 64.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.1e-16 92.4 69 63.8
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 3.2e-16 90.9 69 63.8
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 6.6e-14 83.2 69 62.3
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 1.1e-11 75.9 64 64.1
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 2.6e-10 71.2 85 44.7
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 1.1e-08 65.9 60 63.3
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.6e-07 62.0 51 52.9
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 1.0e-06 59.3 45 64.4


User provided reference genes

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