Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 5.4e-181 637.5 313 100.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 6.4e-174 614.0 313 97.1
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.4e-173 612.1 313 96.2
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.9e-170 602.4 313 93.6
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.1e-169 599.0 313 93.3
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.8e-168 595.9 311 93.2
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-146 523.1 310 82.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.5e-146 523.1 310 82.3
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 3.1e-144 515.4 312 80.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 6.9e-144 514.2 312 80.8
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.8e-142 508.4 312 80.4
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 3.8e-142 508.4 328 77.7
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 4.9e-142 508.1 312 80.4
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.9e-141 506.1 310 80.6
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 3.2e-141 505.4 309 80.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 1.6e-140 503.1 309 80.9
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 4.6e-140 501.5 310 79.4
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.0e-139 500.4 309 79.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.8e-139 499.6 309 79.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-139 498.8 309 79.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.0e-139 498.8 309 79.6
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.1e-139 498.0 309 79.3
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 8.7e-139 497.3 309 78.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.5e-138 496.5 309 79.3
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.4e-138 494.2 309 78.6
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 9.7e-138 493.8 310 78.7
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.6e-137 493.0 309 79.0
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 2.8e-137 492.3 310 77.4
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 2.8e-137 492.3 309 79.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 4.8e-137 491.5 309 79.3
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 4.8e-137 491.5 309 77.0
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.2e-137 490.7 306 78.1
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 77.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.4e-136 490.0 310 78.1
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 79.3
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.8e-136 489.6 314 77.7
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.8e-136 489.6 309 78.0
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.1e-136 488.8 309 78.3
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.3e-136 488.0 312 79.2
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 6.9e-136 487.6 305 78.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 1.2e-135 486.9 309 77.3
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 2.6e-135 485.7 309 76.7
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 2.6e-135 485.7 311 77.8
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 78.3
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 77.7
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.9e-135 484.6 309 77.7
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.3e-134 483.4 311 77.5
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 2.2e-134 482.6 313 75.7
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 2.2e-134 482.6 309 78.6
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 2.2e-134 482.6 305 78.7
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.2e-134 482.6 305 77.7
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 6.5e-134 481.1 309 78.3
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 6.5e-134 481.1 309 77.7
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 8.5e-134 480.7 313 78.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.9e-133 479.6 311 77.2
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.9e-133 479.6 309 77.3
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.9e-133 479.6 309 77.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 7.2e-133 477.6 305 77.7
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.6e-132 476.5 317 75.7
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.6e-132 476.5 312 76.6
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 2.1e-132 476.1 310 76.5
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 2.1e-132 476.1 312 76.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.6e-132 475.3 306 78.1
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 6.1e-132 474.6 310 77.4
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 6.1e-132 474.6 310 76.1
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.3e-131 472.6 309 77.7
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 76.5
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 76.5
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 8.8e-131 470.7 308 76.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.5e-130 469.9 310 76.1
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.5e-130 469.9 310 77.1
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.9e-130 469.5 329 71.4
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 9.7e-130 467.2 306 77.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.3e-129 466.8 309 75.7
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 6.3e-129 464.5 313 76.4
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.8e-128 463.0 309 75.4
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.3e-128 461.5 299 75.9
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.2e-127 460.3 319 71.8
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.2e-127 460.3 312 74.7
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.5e-127 459.9 318 71.7
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 1.5e-127 459.9 311 74.9
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.6e-127 459.1 314 73.9
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 5.9e-127 458.0 319 72.1
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.3e-126 456.8 310 74.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.7e-126 456.4 308 74.7
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 2.9e-126 455.7 318 70.4
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 3.8e-126 455.3 319 70.8
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 5.0e-126 454.9 335 71.3
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 5.0e-126 454.9 312 73.4
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 6.5e-126 454.5 318 71.1
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 6.5e-126 454.5 321 71.7
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 8.5e-126 454.1 279 79.6
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.9e-125 453.0 279 79.6
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.5e-125 452.6 312 74.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 5.5e-125 451.4 319 70.5
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 7.2e-125 451.1 317 71.0
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 3.6e-124 448.7 248 86.7
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 4.7e-124 448.4 325 69.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.7e-124 448.4 291 77.3
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 7.9e-124 447.6 308 73.1
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 8.8e-123 444.1 309 71.5
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.1e-122 443.7 315 70.2
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 3.1e-120 435.6 316 69.0
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 3.1e-120 435.6 322 68.0
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-119 433.7 268 79.9
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.0e-115 420.6 260 78.5
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.3e-113 411.4 306 67.6
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 1.4e-112 410.2 323 63.8
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.3e-112 408.3 322 64.3
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 4.5e-111 405.2 309 66.3
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-108 396.4 309 67.6
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-106 390.6 310 66.5
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 1.2e-106 390.6 309 67.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.7e-105 385.6 217 86.6
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 8.5e-102 374.4 223 76.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.1e-101 374.0 332 59.6
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.1e-100 369.8 232 77.2
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 4.7e-100 368.6 301 62.1
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.1e-100 368.2 301 62.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 6.8e-99 364.8 354 53.4
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.2e-98 364.0 308 60.1
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.8e-89 332.8 204 80.9
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-88 330.5 226 73.9
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.2e-87 327.4 321 57.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.9e-85 320.1 238 64.7
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 3.9e-78 295.8 165 86.1
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.9e-78 295.8 208 72.6
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 9.5e-77 291.2 243 60.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 1.2e-76 290.8 316 50.6
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 9.2e-72 274.6 157 86.6
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 2.3e-67 260.0 361 43.5
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 4.0e-67 259.2 171 77.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.4e-64 250.0 150 80.0
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.7e-62 243.8 165 72.7
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 9.5e-61 238.0 171 70.8
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.0e-59 232.6 134 82.1
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 3.2e-56 223.0 132 87.1
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.5e-53 214.2 292 43.5
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.7e-49 200.7 121 77.7
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.9e-49 199.1 121 77.7
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-49 198.7 121 77.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-49 198.7 121 77.7
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-49 198.4 112 84.8
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-48 196.8 121 76.9
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.4e-48 195.7 116 79.3
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.1e-48 195.3 118 78.0
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-47 194.1 118 78.0
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-47 193.4 296 43.6
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.0e-46 191.4 118 76.3
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-46 189.9 118 74.6
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.8e-43 180.6 239 47.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.9e-43 178.7 157 61.8
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.1e-40 168.7 93 87.1
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 2.7e-39 166.8 102 75.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 7.9e-39 165.2 102 74.5
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.1e-32 142.1 84 78.6
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.3e-32 141.7 81 84.0
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.3e-30 137.1 136 56.6
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 4.8e-28 129.4 94 68.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 4.5e-26 122.9 122 53.3
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 4.5e-26 122.9 122 53.3
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.9e-23 112.1 93 62.4
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-22 111.3 64 85.9
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-22 110.2 64 85.9
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 1.5e-21 107.8 63 82.5
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-20 104.8 93 60.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.8e-20 103.6 74 74.3
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.8e-20 102.8 93 60.2
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 6.9e-19 99.0 79 63.3
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.2e-17 94.0 50 86.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 2.2e-17 94.0 50 86.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.5e-17 92.4 50 84.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 6.5e-17 92.4 50 84.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-16 91.3 47 85.1
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.2e-16 90.1 107 49.5
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.2e-15 88.2 226 29.2
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 5.5e-08 62.8 93 45.2


User provided reference genes

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