Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 8.0e-103 377.1 190 100.0
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-94 349.7 190 95.3
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.0e-94 348.6 190 94.7
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 5.2e-94 347.8 190 94.7
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 8.3e-92 340.5 190 90.5
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.4e-91 337.8 190 89.5
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 7.8e-90 334.0 190 88.4
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.9e-89 331.6 196 85.7
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.9e-89 331.6 190 87.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.3e-88 328.2 191 89.0
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.3e-88 328.2 190 88.4
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.3e-88 327.4 206 83.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.2e-87 326.6 190 84.2
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.0e-86 323.6 192 85.4
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 5.2e-86 321.2 192 84.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 6.8e-86 320.9 195 82.6
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 8.9e-86 320.5 191 83.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 9.8e-85 317.0 191 83.2
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.3e-84 316.6 191 83.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 8.3e-84 313.9 196 80.1
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 195 81.0
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.4e-83 313.2 191 82.2
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 1.4e-83 313.2 196 81.6
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.4e-83 313.2 195 79.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 1.9e-83 312.8 191 82.2
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 1.9e-83 312.8 196 81.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.9e-83 312.8 193 80.8
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 7.0e-83 310.8 193 79.8
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 7.0e-83 310.8 196 80.1
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 7.0e-83 310.8 197 81.2
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 9.2e-83 310.5 194 80.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.2e-82 310.1 195 79.5
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.2e-82 310.1 194 80.9
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.2e-82 310.1 196 81.1
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 1.6e-82 309.7 195 79.5
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 2.0e-82 309.3 191 80.6
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.7e-82 308.9 195 79.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 6.0e-82 307.8 193 80.3
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 6.0e-82 307.8 195 79.0
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 6.0e-82 307.8 194 79.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 7.8e-82 307.4 192 78.6
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 7.8e-82 307.4 199 77.9
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 1.0e-81 307.0 196 78.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.3e-81 306.6 193 78.2
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.3e-81 306.6 199 76.4
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 1.3e-81 306.6 192 79.2
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 1.3e-81 306.6 200 76.5
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 3.9e-81 305.1 196 79.1
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 6.6e-81 304.3 195 79.0
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.1e-80 303.5 193 79.3
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.5e-80 303.1 195 78.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.5e-80 302.4 191 79.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.3e-80 302.0 214 72.9
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.5e-80 300.4 196 77.6
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.5e-80 300.4 196 77.6
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.2e-79 300.1 196 76.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-79 299.7 197 76.1
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.1e-79 299.3 196 77.0
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.2e-79 297.7 198 75.8
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 6.2e-79 297.7 200 74.5
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 8.1e-79 297.4 201 75.1
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.8e-78 296.2 239 65.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.8e-78 296.2 198 76.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.1e-78 295.4 194 73.7
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 3.1e-78 295.4 191 79.6
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 5.2e-78 294.7 194 75.8
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 6.8e-78 294.3 201 74.1
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.2e-77 293.5 203 73.4
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.2e-77 293.5 201 74.1
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.5e-77 293.1 204 74.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 2.0e-77 292.7 203 73.9
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.4e-77 292.0 196 73.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.4e-77 291.6 199 73.4
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 4.4e-77 291.6 196 74.5
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 4.4e-77 291.6 208 73.1
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.4e-77 291.6 202 73.8
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 4.4e-77 291.6 202 73.8
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 5.8e-77 291.2 202 73.3
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 5.8e-77 291.2 198 75.8
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.5e-77 290.8 200 72.0
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 9.8e-77 290.4 201 72.6
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 9.8e-77 290.4 201 72.6
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 9.8e-77 290.4 201 72.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 72.1
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.7e-76 289.7 201 72.1
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.9e-76 288.9 205 71.2
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.9e-76 288.9 200 74.5
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 3.7e-76 288.5 201 72.1
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 3.7e-76 288.5 201 72.1
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 8.3e-76 287.3 203 70.0
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-75 287.0 201 71.6
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.1e-75 287.0 202 71.8
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.9e-75 286.2 201 71.6
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.9e-75 286.2 201 71.6
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-75 286.2 203 69.5
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.4e-75 285.8 205 69.3
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 4.1e-75 285.0 199 72.9
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 5.4e-75 284.6 194 74.7
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 9.2e-75 283.9 199 71.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 9.2e-75 283.9 199 71.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.2e-75 283.9 203 70.4
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.1e-74 282.7 196 73.5
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.7e-74 282.3 196 73.5
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.0e-73 280.4 200 72.5
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.0e-73 280.4 206 68.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.7e-73 279.6 200 71.5
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.7e-73 279.6 198 71.7
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 5.1e-73 278.1 193 74.1
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.1e-72 276.9 176 79.5
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.5e-72 276.6 202 69.8
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.9e-72 276.2 202 69.8
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 2.5e-72 275.8 204 69.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.3e-72 275.0 198 68.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.2e-71 273.5 173 77.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.6e-71 273.1 200 70.5
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 2.8e-71 272.3 197 71.6
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 2.3e-70 269.2 201 69.7
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.1e-70 268.9 213 67.1
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 4.0e-70 268.5 200 68.0
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 4.0e-70 268.5 212 67.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.2e-69 266.9 188 71.8
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.6e-69 265.8 194 71.1
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.8e-69 264.6 177 76.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 2.9e-68 262.3 206 67.5
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 3.7e-68 261.9 225 62.2
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.4e-68 260.8 194 68.6
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.4e-67 259.2 189 70.9
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.7e-66 255.8 185 69.2
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 2.7e-66 255.8 235 60.9
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.0e-65 253.8 199 64.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.7e-65 253.1 203 65.5
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 3.9e-65 251.9 182 70.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.1e-64 250.4 183 68.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.3e-64 248.4 198 63.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.0e-62 241.9 215 60.5
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 8.9e-62 240.7 186 65.6
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.2e-61 240.4 192 67.7
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.4e-59 232.6 184 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 4.2e-59 231.9 177 68.4
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.3e-57 226.1 200 57.5
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 3.0e-57 225.7 179 66.5
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 5.1e-57 224.9 203 61.6
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.5e-56 222.6 190 62.1
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 7.9e-50 201.1 122 82.0
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 3.6e-47 192.2 155 65.2
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 4.5e-45 185.3 116 75.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 7.9e-42 174.5 100 89.0
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.8e-41 173.3 99 89.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.1e-40 170.6 102 83.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.8e-39 166.0 173 53.8
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.3e-36 157.1 99 80.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 5.5e-35 151.8 188 51.1
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 5.9e-29 131.7 70 91.4
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.0e-28 128.6 97 68.0
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 5.0e-28 128.6 198 45.5
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.9e-27 126.7 99 65.7
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-26 123.6 77 75.3
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 8.7e-25 117.9 192 35.9
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.5e-24 117.1 74 74.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 1.5e-21 107.1 185 37.3
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.3e-20 104.0 100 60.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 3.2e-19 99.4 190 40.0
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-19 99.4 72 72.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.0e-17 94.4 190 37.9
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 4.3e-16 89.0 80 57.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 8.2e-15 84.7 164 36.6
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.4e-13 79.3 51 76.5
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 7.7e-13 78.2 74 52.7
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.0e-12 77.8 51 74.5
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.8e-12 75.9 62 59.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 5.1e-09 65.5 72 51.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 9.7e-08 61.2 57 54.4


User provided reference genes

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