Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 5.2e-67 258.1 182 100.0
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 3.6e-44 182.2 201 69.7
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.0e-42 176.4 199 67.8
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 1.7e-41 173.3 195 68.2
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-40 170.6 194 67.0
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.1e-40 170.6 194 67.0
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 2.1e-39 166.4 195 66.2
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.7e-38 163.3 192 66.1
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.0e-35 152.1 196 62.8
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 1.4e-32 143.7 204 59.8
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 4.1e-32 142.1 196 60.2
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 7.1e-32 141.4 196 54.1
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 2.3e-30 136.3 155 59.4
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 6.6e-30 134.8 154 57.1
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 8.6e-30 134.4 195 52.3
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 1.5e-29 133.7 198 57.6
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 5.6e-29 131.7 181 56.4
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 5.6e-29 131.7 154 57.8
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 7.3e-29 131.3 181 61.3
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.2e-28 130.6 192 54.7
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 2.1e-28 129.8 196 57.7
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 2.1e-28 129.8 198 56.6
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 2.1e-28 129.8 197 53.3
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 4.7e-28 128.6 196 51.0
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 4.7e-28 128.6 195 55.4
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 6.2e-28 128.3 159 56.6
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.1e-27 127.5 200 55.0
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 1.1e-27 127.5 190 53.2
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 1.4e-27 127.1 200 51.0
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 1.4e-27 127.1 207 49.3
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 1.4e-27 127.1 189 51.9
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 1.8e-27 126.7 205 54.1
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 2.4e-27 126.3 154 54.5
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.4e-27 126.3 202 52.5
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 5.2e-27 125.2 193 49.7
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 8.9e-27 124.4 159 55.3
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 1.5e-26 123.6 198 52.0
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 1.5e-26 123.6 193 57.0
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 1.5e-26 123.6 190 57.9
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 2.0e-26 123.2 201 49.3
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 2.0e-26 123.2 158 55.1
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 2.6e-26 122.9 205 51.7
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 3.4e-26 122.5 146 56.8
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 4.4e-26 122.1 153 56.2
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 4.4e-26 122.1 196 52.0
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 7.6e-26 121.3 193 54.9
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 9.9e-26 120.9 160 55.0
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 9.9e-26 120.9 189 57.7
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.3e-25 120.6 203 49.3
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.7e-25 120.2 205 52.7
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 6.4e-25 118.2 198 50.5
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 8.4e-25 117.9 150 54.0
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 1.4e-24 117.1 211 46.9
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.9e-24 116.7 183 55.7
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 2.4e-24 116.3 179 55.9
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.2e-24 115.9 153 52.9
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 3.2e-24 115.9 156 54.5
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 4.2e-24 115.5 198 48.5
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 4.2e-24 115.5 200 54.5
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 4.2e-24 115.5 192 54.2
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 5.4e-24 115.2 140 57.9
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 5.4e-24 115.2 153 52.9
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 5.4e-24 115.2 88 80.7
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 7.1e-24 114.8 148 57.4
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 9.3e-24 114.4 150 54.0
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.2e-23 114.0 200 54.5
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 2.1e-23 113.2 148 54.1
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 4.6e-23 112.1 145 54.5
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 1.7e-22 110.2 157 52.9
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.7e-22 110.2 187 48.1
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 1.7e-22 110.2 194 54.1
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.7e-22 110.2 144 54.9
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.7e-22 110.2 144 54.9
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.3e-22 109.8 150 51.3
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.0e-22 109.4 146 53.4
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 3.0e-22 109.4 157 51.6
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 5.1e-22 108.6 192 54.7
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 5.1e-22 108.6 148 53.4
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 8.7e-22 107.8 150 52.7
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 8.7e-22 107.8 191 49.2
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 1.1e-21 107.5 156 51.9
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 1.1e-21 107.5 151 51.7
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 1.9e-21 106.7 184 50.0
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 5.6e-21 105.1 168 50.0
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 5.6e-21 105.1 151 51.0
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.3e-21 104.8 159 49.1
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 9.6e-21 104.4 156 51.3
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.3e-20 104.0 161 50.9
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 1.3e-20 104.0 147 51.0
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.6e-20 103.6 158 50.0
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 2.1e-20 103.2 153 51.0
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 3.6e-20 102.4 155 52.3
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 3.6e-20 102.4 137 53.3
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 8.1e-20 101.3 137 52.6
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 1.1e-19 100.9 184 53.8
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 1.8e-19 100.1 158 50.6
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 3.1e-19 99.4 90 72.2
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 3.1e-19 99.4 144 51.4
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 4.0e-19 99.0 144 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 5.3e-19 98.6 75 81.3
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 5.3e-19 98.6 75 77.3
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.3e-19 98.6 201 51.2
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 6.9e-19 98.2 75 81.3
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 6.9e-19 98.2 143 51.0
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 9.0e-19 97.8 141 51.1
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.2e-18 97.4 75 80.0
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 1.2e-18 97.4 89 70.8
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.6e-18 96.3 75 80.0
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 2.6e-18 96.3 75 80.0
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 2.6e-18 96.3 90 70.0
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 3.4e-18 95.9 90 71.1
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 3.4e-18 95.9 90 71.1
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 3.4e-18 95.9 163 49.1
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 3.4e-18 95.9 76 80.3
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 7.6e-18 94.7 90 68.9
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 7.6e-18 94.7 191 45.0
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 9.9e-18 94.4 194 51.0
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 2.2e-17 93.2 70 80.0
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 2.2e-17 93.2 90 68.9
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.9e-17 92.8 75 76.0
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 3.8e-17 92.4 75 74.7
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 3.8e-17 92.4 69 81.2
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.8e-17 92.4 153 48.4
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.8e-17 92.4 153 48.4
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 4.9e-17 92.0 75 76.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 4.9e-17 92.0 75 76.0
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 4.9e-17 92.0 75 76.0
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 4.9e-17 92.0 75 76.0
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 8.4e-17 91.3 69 79.7
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.4e-17 91.3 147 49.0
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 8.4e-17 91.3 147 49.0
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 1.4e-16 90.5 69 78.3
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 3.2e-16 89.4 191 51.3
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 4.2e-16 89.0 71 76.1
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 5.4e-16 88.6 120 51.7
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 7.1e-16 88.2 70 80.0
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 7.1e-16 88.2 200 49.0
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 7.1e-16 88.2 200 49.0
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 1.2e-15 87.4 127 49.6
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 1.6e-15 87.0 150 47.3
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 4.6e-15 85.5 62 83.9
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 1.0e-14 84.3 60 85.0
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 1.8e-14 83.6 117 51.3
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 1.8e-14 83.6 74 70.3
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 3.9e-14 82.4 62 80.6
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.1e-13 80.9 115 52.2
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.8e-12 76.3 65 75.4
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 2.8e-12 76.3 58 81.0
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 2.8e-12 76.3 58 81.0
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 6.2e-12 75.1 67 74.6
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 4.0e-11 72.4 47 85.1
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 9.0e-11 71.2 188 41.5
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 2.6e-10 69.7 60 71.7
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 4.5e-10 68.9 91 56.0


User provided reference genes

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