Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 4.6e-42 174.1 85 100.0
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.2e-35 151.4 85 84.7
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 4.8e-31 137.5 74 86.5
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 7.6e-29 130.2 85 75.3
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 9.9e-29 129.8 85 76.5
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 8.4e-28 126.7 72 84.7
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 1.4e-27 125.9 79 75.9
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.2e-27 124.8 85 72.9
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 4.2e-27 124.4 82 73.2
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 3.5e-26 121.3 81 75.3
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 4.6e-26 120.9 86 74.4
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 3.8e-20 101.3 81 63.0
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 4.2e-19 97.8 81 63.0
Solyc06g065073.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 1.5e-16 89.4 81 56.8
Sopen06g023600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.5e-16 89.4 81 56.8
PGSC0003DMG400031328 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.5e-16 89.4 81 56.8
Peaxi162Scf00268g00024 Petunia axillaris HOM05D008200 ORTHO05D007342 1.6e-15 85.9 82 52.4
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-15 85.1 66 65.2
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 3.7e-15 84.7 71 57.7
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 8.2e-15 83.6 82 50.0
Nitab4.5_0006133g0030 Nicotiana tabacum HOM05D008200 ORTHO05D007342 8.2e-15 83.6 82 53.7
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 9.0e-14 80.1 51 66.7
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 9.0e-14 80.1 51 66.7
Sopen03g029540 Solanum pennellii HOM05D008200 ORTHO05D010849 2.0e-13 79.0 51 68.6
CAN.G2197.1 Capsicum annuum HOM05D008200 ORTHO05D010849 3.4e-13 78.2 51 66.7
PGSC0003DMG400004548 Solanum tuberosum HOM05D008200 ORTHO05D010849 4.5e-13 77.8 51 68.6
Solyc03g020060.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 7.7e-13 77.0 51 66.7
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 1.0e-12 76.6 82 48.8
PGSC0003DMG400015289 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.7e-12 75.9 51 68.6
PGSC0003DMG400039762 Solanum tuberosum HOM05D008200 ORTHO05D010849 5.0e-12 74.3 52 61.5
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 8.5e-12 73.6 82 51.2
CAN.G861.41 Capsicum annuum HOM05D008200 ORTHO05D010849 1.1e-11 73.2 51 58.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.1e-11 73.2 76 48.7
Nitab4.5_0000363g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.4e-11 72.8 51 58.8
Nitab4.5_0003324g0100 Nicotiana tabacum HOM05D008200 ORTHO05D010849 1.4e-11 72.8 71 47.9
Solyc03g020030.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.9e-11 72.4 54 61.1
Solyc03g020040.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.9e-11 72.4 54 61.1
Sopen03g029600 Solanum pennellii HOM05D008200 ORTHO05D010849 1.9e-11 72.4 54 61.1
Sopen11g011140 Solanum pennellii HOM05D008200 ORTHO05D010849 1.9e-11 72.4 84 46.4
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 3.2e-11 71.6 77 48.1
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 4.2e-11 71.2 76 47.4
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 7.2e-11 70.5 65 47.7
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 1.2e-10 69.7 52 59.6
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.6e-10 69.3 82 42.7
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 2.1e-10 68.9 80 43.8
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 4.6e-10 67.8 78 51.3
Peaxi162Scf00798g00320 Petunia axillaris HOM05D008200 ORTHO05D007342 4.6e-10 67.8 84 45.2
Solyc11g020990.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.0e-09 66.6 76 43.4
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.4e-09 66.2 76 44.7
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.8e-09 65.9 78 48.7
PGSC0003DMG400015287 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.8e-09 65.9 51 56.9
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 2.3e-09 65.5 66 51.5
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.9e-09 64.7 78 50.0
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 6.7e-09 63.9 79 41.8
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 8.8e-09 63.5 78 42.3
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 8.8e-09 63.5 78 48.7
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.1e-08 63.2 76 43.4
Sopen03g029580 Solanum pennellii HOM05D008200 ORTHO05D010849 1.1e-08 63.2 51 54.9
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.5e-08 62.8 80 47.5
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 1.5e-08 62.8 78 50.0
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.5e-08 62.8 79 49.4
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.5e-08 62.8 79 48.1
PGSC0003DMG400009268 Solanum tuberosum HOM05D008200 ORTHO05D010849 1.5e-08 62.8 73 41.1
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.9e-08 62.4 78 39.7
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 4.3e-08 61.2 83 49.4
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.3e-08 61.2 80 45.0
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 4.3e-08 61.2 78 50.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 4.3e-08 61.2 75 40.0
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 5.7e-08 60.8 73 46.6
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 7.4e-08 60.5 78 39.7
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 7.4e-08 60.5 73 46.6
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.4e-08 60.5 73 46.6
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 9.7e-08 60.1 80 46.2
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.3e-07 59.7 83 48.2
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.2e-07 58.9 71 47.9
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.2e-07 58.9 71 47.9
Nitab4.5_0010009g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 2.8e-07 58.5 51 43.1
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 3.7e-07 58.2 80 47.5
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 4.8e-07 57.8 52 50.0
Lalb_Chr01g0016231 Lupinus albus HOM05D007628 ORTHO05D007342 4.8e-07 57.8 71 42.3
Peaxi162Scf00391g00620 Petunia axillaris HOM05D008200 ORTHO05D010849 4.8e-07 57.8 57 47.4
Nitab4.5_0014015g0010 Nicotiana tabacum HOM05D008200 ORTHO05D010849 6.3e-07 57.4 51 41.2
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 8.2e-07 57.0 76 42.1
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 1.4e-06 56.2 72 47.2
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 1.4e-06 56.2 72 47.2
Sopen11g011150 Solanum pennellii HOM05D008200 ORTHO05D010849 1.4e-06 56.2 65 35.4
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 1.8e-06 55.8 79 45.6
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 2.4e-06 55.5 73 45.2
Nitab4.5_0005255g0020 Nicotiana tabacum HOM05D008200 ORTHO05D010849 2.4e-06 55.5 54 42.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 9.1e-06 53.5 81 39.5
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 9.1e-06 53.5 83 31.3


User provided reference genes

Program Settings