Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.4e-234 815.8 409 100.0
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 7.0e-221 770.4 409 94.6
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.7e-220 768.5 409 93.9
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 7.7e-220 766.9 409 93.6
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.8e-219 764.6 409 94.1
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 8.5e-219 763.5 409 93.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 3.6e-217 758.1 409 91.9
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.6e-159 565.8 408 68.6
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 8.1e-153 544.3 407 66.6
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 6.9e-152 541.2 347 74.9
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.9e-150 535.8 421 64.8
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.1e-149 533.9 364 71.7
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.2e-149 532.3 348 73.9
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 3.2e-149 532.3 410 64.6
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.1e-148 529.6 408 64.5
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 7.9e-148 527.7 346 74.0
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 1.8e-147 526.6 420 64.3
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.9e-146 523.1 414 63.8
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 5.6e-146 521.5 349 72.8
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 9.6e-146 520.8 391 67.0
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 2.8e-145 519.2 412 64.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.8e-145 518.5 368 67.9
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.1e-144 517.3 287 91.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 4.0e-144 515.4 346 70.8
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 9.0e-144 514.2 355 69.9
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.2e-143 513.8 414 62.3
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.0e-143 513.1 344 71.5
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.6e-143 512.7 414 62.3
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 2.6e-143 512.7 375 66.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.0e-142 510.8 347 71.2
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.3e-142 510.4 411 63.0
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.8e-142 508.8 389 65.0
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 4.9e-142 508.4 411 62.5
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.9e-142 508.4 364 67.9
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 6.5e-142 508.1 346 69.9
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 8.4e-142 507.7 411 63.5
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.1e-141 507.3 357 67.2
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.5e-141 506.1 408 61.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.2e-141 505.8 412 62.1
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.2e-141 505.8 346 70.2
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.1e-141 504.6 341 71.0
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.1e-141 504.6 375 65.6
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.2e-140 503.8 410 62.9
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.6e-140 503.4 409 63.8
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 2.1e-140 503.1 397 62.5
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 4.6e-140 501.9 487 55.4
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 4.6e-140 501.9 346 69.7
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 6.1e-140 501.5 345 69.6
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 7.9e-140 501.1 344 69.5
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.3e-139 499.6 397 62.2
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 3.0e-139 499.2 340 68.5
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 5.1e-139 498.4 430 59.3
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.1e-138 497.3 394 62.9
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.5e-138 496.9 342 69.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 4.3e-138 495.4 348 69.5
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 7.4e-138 494.6 362 67.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.3e-137 493.8 342 69.3
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.2e-137 493.0 353 65.7
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.8e-137 492.7 339 70.2
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 1.8e-136 490.0 341 68.0
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 5.3e-136 488.4 341 69.8
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 2.0e-135 486.5 343 68.8
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.0e-134 484.2 358 66.2
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 1.3e-134 483.8 364 65.1
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 5.0e-134 481.9 350 65.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 6.5e-134 481.5 342 67.5
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 1.1e-133 480.7 342 67.8
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.2e-133 479.2 408 59.8
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.5e-133 478.4 352 65.6
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.5e-133 478.4 355 65.4
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.4e-131 473.8 353 64.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.8e-131 473.4 344 65.4
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 3.9e-131 472.2 342 65.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 8.8e-131 471.1 344 65.4
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.5e-130 470.3 344 65.4
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 2.5e-130 469.5 344 65.1
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 2.5e-130 469.5 344 65.1
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.5e-130 469.5 411 58.2
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 2.5e-130 469.5 388 60.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 7.4e-130 468.0 318 70.1
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.2e-129 466.5 318 69.8
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.2e-129 466.5 318 69.8
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 4.8e-129 465.3 347 66.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 6.3e-129 464.9 344 64.5
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 8.2e-129 464.5 346 64.5
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 1.4e-128 463.8 410 55.1
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.4e-128 463.8 346 64.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 3.1e-128 462.6 314 71.3
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 4.1e-128 462.2 346 63.9
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 6.9e-128 461.5 362 62.4
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 6.9e-128 461.5 396 58.1
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.2e-127 460.7 305 71.1
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.9e-127 458.4 353 62.6
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 8.5e-126 454.5 371 61.5
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 3.2e-125 452.6 346 62.7
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 3.2e-125 452.6 346 62.7
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 9.4e-125 451.1 360 63.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 8.8e-123 444.5 368 62.2
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 1.1e-122 444.1 360 64.2
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.6e-122 443.0 337 64.7
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.7e-121 439.1 280 76.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.1e-120 437.6 345 62.9
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 2.0e-119 433.3 298 71.8
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.3e-118 430.6 622 43.2
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 5.5e-117 425.2 318 64.8
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.6e-116 423.7 292 70.9
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.3e-113 414.1 328 59.5
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.7e-110 403.7 330 63.0
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.2e-109 399.4 269 69.9
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.2e-109 399.1 270 69.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.4e-104 384.0 299 62.9
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 6.3e-97 358.6 329 52.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 8.3e-97 358.2 261 63.2
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 9.1e-96 354.8 345 49.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 6.6e-94 348.6 328 51.5
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 2.5e-93 346.7 347 52.4
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.7e-89 334.0 315 50.2
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 2.8e-89 333.2 302 59.3
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 7.0e-88 328.6 328 49.4
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 4.3e-85 319.3 309 56.0
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.6e-84 316.2 284 58.5
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 7.0e-80 302.0 219 61.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.9e-78 296.2 281 53.7
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-76 290.4 255 61.2
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 4.4e-74 282.7 211 67.3
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 6.0e-71 272.3 173 74.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-65 254.6 246 52.4
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.2e-63 248.1 181 66.3
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 6.6e-54 215.7 225 52.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.7e-46 191.0 331 35.6
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.5e-42 177.9 117 65.0
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.6e-42 175.6 204 50.0
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.3e-36 158.3 150 49.3
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.8e-36 157.1 304 33.9
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 2.5e-32 144.1 92 67.4
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.2e-32 143.3 131 58.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.1e-28 131.0 97 59.8
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 3.7e-28 130.2 290 32.1
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.7e-15 87.4 74 60.8
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 6.1e-15 86.3 109 48.6
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 7.9e-15 85.9 86 45.3


User provided reference genes

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