Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2003.2 Capsicum annuum HOM05D000003 ORTHO05D000007 4.5e-135 484.6 239 100.0
CAN.G255.11 Capsicum annuum HOM05D000003 ORTHO05D000007 5.8e-18 95.5 117 43.6
Peaxi162Scf00351g00517 Petunia axillaris HOM05D005774 ORTHO05D006516 2.9e-17 93.2 143 35.0
CAN.G1358.11 Capsicum annuum HOM05D001814 ORTHO05D001845 3.8e-17 92.8 140 40.7
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 4.9e-17 92.4 205 32.7
Peaxi162Scf00464g00213 Petunia axillaris HOM05D000003 ORTHO05D000007 1.1e-16 91.3 138 35.5
CAN.G339.19 Capsicum annuum HOM05D000003 ORTHO05D000007 5.5e-16 89.0 88 44.3
Peaxi162Scf00069g02020 Petunia axillaris HOM05D005774 ORTHO05D000007 7.1e-16 88.6 130 36.2
Peaxi162Scf00136g02011 Petunia axillaris HOM05D000003 ORTHO05D000007 1.6e-15 87.4 140 34.3
COL.COLO4_28682 Corchorus olitorius HOM05D000003 ORTHO05D000007 4.3e-13 79.3 150 34.0
QL04p037455 Quercus lobata HOM05D000003 ORTHO05D000007 9.7e-13 78.2 71 49.3
QL11p054864 Quercus lobata HOM05D000003 ORTHO05D000007 3.7e-12 76.3 91 37.4
QL01p003323 Quercus lobata HOM05D002710 ORTHO05D002905 6.3e-12 75.5 74 41.9
RcHm_v2.0_Chr2g0146151 Rosa chinensis HOM05D000003 ORTHO05D000006 1.1e-11 74.7 86 37.2
PGSC0003DMG400016597 Solanum tuberosum HOM05D000003 ORTHO05D000007 1.1e-11 74.7 63 52.4
COL.COLO4_28420 Corchorus olitorius HOM05D016024 ORTHO05D000007 1.4e-11 74.3 102 37.3
Gorai.006G161900 Gossypium raimondii HOM05D000003 ORTHO05D000007 1.8e-11 73.9 78 41.0
QL02p083425 Quercus lobata HOM05D000003 ORTHO05D000007 1.8e-11 73.9 69 44.9
QL05p047662 Quercus lobata HOM05D000003 ORTHO05D000007 2.4e-11 73.6 86 43.0
RcHm_v2.0_Chr3g0492931 Rosa chinensis HOM05D000003 ORTHO05D000007 2.4e-11 73.6 96 34.4
QL08p009646 Quercus lobata HOM05D000003 ORTHO05D000007 3.1e-11 73.2 138 34.8
QL08p054104 Quercus lobata HOM05D000003 ORTHO05D000007 4.1e-11 72.8 148 33.1
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.3e-11 72.4 86 39.5
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 5.3e-11 72.4 69 42.0
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 5.3e-11 72.4 69 42.0
QL12p006495 Quercus lobata HOM05D000003 ORTHO05D000007 6.9e-11 72.0 131 31.3
QL04p067563 Quercus lobata HOM05D000003 ORTHO05D000007 9.0e-11 71.6 69 37.7
QL06p011077 Quercus lobata HOM05D000003 ORTHO05D000007 9.0e-11 71.6 77 37.7
PSO017G4416 Papaver somniferum HOM05D000003 ORTHO05D000007 1.2e-10 71.2 73 43.8
Prupe.7G019600 Prunus persica HOM05D000003 ORTHO05D000007 1.2e-10 71.2 80 41.2
Sabra08G0135000 Salix brachista HOM05D000003 ORTHO05D000007 1.2e-10 71.2 121 30.6
COL.COLO4_23636 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.5e-10 70.9 104 34.6
QL03p025414 Quercus lobata HOM05D000003 ORTHO05D000007 2.0e-10 70.5 160 30.0
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.6e-10 70.1 88 40.9
QL01p019582 Quercus lobata HOM05D000003 ORTHO05D000007 2.6e-10 70.1 69 39.1
QL02p099277 Quercus lobata HOM05D000003 ORTHO05D000007 3.4e-10 69.7 98 33.7
Sabra15G0091800 Salix brachista HOM05D000003 ORTHO05D000007 3.4e-10 69.7 92 32.6
EL10Ac3g06843 Beta vulgaris HOM05D000003 ORTHO05D000007 4.5e-10 69.3 73 42.5
Prupe.2G044900 Prunus persica HOM05D000003 ORTHO05D000007 4.5e-10 69.3 72 40.3
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 4.5e-10 69.3 131 33.6
Sabra09G0015300 Salix brachista HOM05D000003 ORTHO05D000006 4.5e-10 69.3 92 31.5
PSO017G5897 Papaver somniferum HOM05D000003 ORTHO05D000007 5.9e-10 68.9 76 36.8
TPR.G23335 Trifolium pratense HOM05D000003 ORTHO05D000007 5.9e-10 68.9 70 41.4
Atru.chr2.285 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-10 68.6 82 32.9
BcaC09g49796 Brassica carinata HOM05D000003 ORTHO05D000007 7.7e-10 68.6 114 34.2
Sabra06G0138800 Salix brachista HOM05D000003 ORTHO05D000007 7.7e-10 68.6 76 32.9
TPR.G22161 Trifolium pratense HOM05D000003 ORTHO05D000007 7.7e-10 68.6 155 30.3
Atru.chr11.754 Acer truncatum HOM05D000003 ORTHO05D000007 1.0e-09 68.2 183 26.8
Atru.chr7.255 Acer truncatum HOM05D000003 ORTHO05D000007 1.0e-09 68.2 72 38.9
COL.COLO4_07245 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.0e-09 68.2 180 30.0
Lj4g0016016 Lotus japonicus HOM05D000003 ORTHO05D000007 1.0e-09 68.2 129 32.6
QL02p074972 Quercus lobata HOM05D000003 ORTHO05D000007 1.0e-09 68.2 69 42.0
QL02p080468 Quercus lobata HOM05D000003 ORTHO05D000007 1.0e-09 68.2 100 34.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 1.0e-09 68.2 84 38.1
PGR142G4317 Punica granatum HOM05D000003 ORTHO05D000007 1.3e-09 67.8 194 25.8
PSO832G0039 Papaver somniferum HOM05D000003 ORTHO05D000007 1.7e-09 67.4 137 29.2
Atru.chr6.753 Acer truncatum HOM05D000003 ORTHO05D000007 2.2e-09 67.0 67 43.3
QL10p063003 Quercus lobata HOM05D000003 ORTHO05D000007 2.2e-09 67.0 75 33.3
TPR.G32099 Trifolium pratense HOM05D000003 ORTHO05D000007 2.2e-09 67.0 127 29.9
Atru.chr2.1276 Acer truncatum HOM05D000003 ORTHO05D000007 3.8e-09 66.2 116 31.0
PSO541G5827 Papaver somniferum HOM05D000003 ORTHO05D000007 3.8e-09 66.2 89 33.7
Manes.07G103102 Manihot esculenta HOM05D000003 ORTHO05D000004 5.0e-09 65.9 83 33.7
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 5.0e-09 65.9 65 38.5
RcHm_v2.0_Chr2g0171821 Rosa chinensis HOM05D000003 ORTHO05D000007 5.0e-09 65.9 87 36.8
RcHm_v2.0_Chr7g0187781 Rosa chinensis HOM05D000003 ORTHO05D000007 5.0e-09 65.9 79 35.4
EL10Ac2g03868 Beta vulgaris HOM05D000003 ORTHO05D000007 6.5e-09 65.5 73 41.1
EL10Ac4g10100 Beta vulgaris HOM05D000003 ORTHO05D000007 6.5e-09 65.5 73 41.1
EL10Ac5g10755 Beta vulgaris HOM05D000003 ORTHO05D000007 6.5e-09 65.5 178 29.2
FvH4_1g28741 Fragaria vesca HOM05D000003 ORTHO05D000007 6.5e-09 65.5 87 32.2
QL02p014176 Quercus lobata HOM05D000003 ORTHO05D000007 6.5e-09 65.5 74 33.8
QL05p001305 Quercus lobata HOM05D000003 ORTHO05D000007 6.5e-09 65.5 68 33.8
QL08p065182 Quercus lobata HOM05D000003 ORTHO05D000007 6.5e-09 65.5 86 36.0
TPR.G34138 Trifolium pratense HOM05D000003 ORTHO05D000007 6.5e-09 65.5 77 37.7
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 8.5e-09 65.1 146 31.5
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 8.5e-09 65.1 67 40.3
FvH4_3g33091 Fragaria vesca HOM05D000003 ORTHO05D000022 8.5e-09 65.1 73 39.7
Prupe.2G097600 Prunus persica HOM05D000003 ORTHO05D000007 8.5e-09 65.1 73 37.0
QL08p058815 Quercus lobata HOM05D000003 ORTHO05D000007 8.5e-09 65.1 79 36.7
COL.COLO4_12097 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.1e-08 64.7 73 37.0
PSO339G4387 Papaver somniferum HOM05D000003 ORTHO05D000007 1.1e-08 64.7 163 27.6
Prupe.1G055400 Prunus persica HOM05D000003 ORTHO05D000007 1.1e-08 64.7 95 30.5
EL10Ac6g13602 Beta vulgaris HOM05D000003 ORTHO05D000007 1.4e-08 64.3 158 27.2
BcaB06g26466 Brassica carinata HOM05D000003 ORTHO05D000007 1.4e-08 64.3 72 40.3
TPR.G39739 Trifolium pratense HOM05D000003 ORTHO05D000007 1.4e-08 64.3 163 28.8
BcaC01g01499 Brassica carinata HOM05D000003 ORTHO05D000007 1.9e-08 63.9 101 32.7
COL.COLO4_33809 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.9e-08 63.9 97 34.0
LjContig00141g0023727 Lotus japonicus HOM05D013113 ORTHO05D000007 1.9e-08 63.9 145 27.6
QL11p001943 Quercus lobata HOM05D000003 ORTHO05D000007 1.9e-08 63.9 88 29.5
TPR.G22534 Trifolium pratense HOM05D000003 ORTHO05D000007 1.9e-08 63.9 151 29.1
Lj4g0026510 Lotus japonicus HOM05D000003 ORTHO05D000007 2.5e-08 63.5 177 28.2
QL10p038312 Quercus lobata HOM05D000003 ORTHO05D000007 2.5e-08 63.5 85 36.5
Sabra15G0020800 Salix brachista HOM05D013820 ORTHO05D000007 2.5e-08 63.5 104 34.6
BcaC04g19511 Brassica carinata HOM05D000003 ORTHO05D000007 3.2e-08 63.2 82 37.8
BcaC04g22140 Brassica carinata HOM05D000003 ORTHO05D000007 3.2e-08 63.2 81 33.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 3.2e-08 63.2 87 31.0
Lj3g0023340 Lotus japonicus HOM05D000003 ORTHO05D000007 3.2e-08 63.2 177 28.2
Prupe.2G055100 Prunus persica HOM05D000003 ORTHO05D000007 3.2e-08 63.2 73 35.6
TPR.G23327 Trifolium pratense HOM05D000737 ORTHO05D000581 3.2e-08 63.2 114 32.5
Atru.chr7.1602 Acer truncatum HOM05D000003 ORTHO05D000007 4.2e-08 62.8 114 32.5
TPR.G511 Trifolium pratense HOM05D000003 ORTHO05D000007 4.2e-08 62.8 161 28.0
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-08 62.4 143 28.0
Rhsim09G0202100 Rhododendron simsii HOM05D000003 ORTHO05D000007 5.5e-08 62.4 138 30.4
Atru.chr11.84 Acer truncatum HOM05D000003 ORTHO05D000007 7.2e-08 62.0 83 33.7
Atru.chr7.666 Acer truncatum HOM05D000003 ORTHO05D000007 7.2e-08 62.0 156 26.9
QL05p046120 Quercus lobata HOM05D000003 ORTHO05D000007 7.2e-08 62.0 78 37.2
Sabra15G0018300 Salix brachista HOM05D013820 ORTHO05D000007 7.2e-08 62.0 104 33.7
PGSC0003DMG400013055 Solanum tuberosum HOM05D000003 ORTHO05D000007 7.2e-08 62.0 123 30.9
Atru.chr12.2519 Acer truncatum HOM05D000003 ORTHO05D000007 9.4e-08 61.6 67 38.8
Atru.chr4.106 Acer truncatum HOM05D000003 ORTHO05D000007 1.2e-07 61.2 67 40.3
AT2G01050 Arabidopsis thaliana HOM05D000003 ORTHO05D000007 1.2e-07 61.2 101 29.7
BcaC01g03606 Brassica carinata HOM05D000003 ORTHO05D000007 1.2e-07 61.2 74 40.5
BcaC04g20731 Brassica carinata HOM05D000003 ORTHO05D000007 1.2e-07 61.2 71 40.8
Lj1g0024982 Lotus japonicus HOM05D000003 ORTHO05D000007 1.2e-07 61.2 101 30.7
Prupe.1G231200 Prunus persica HOM05D000003 ORTHO05D000007 1.2e-07 61.2 72 34.7
Sabra04G0049100 Salix brachista HOM05D000003 ORTHO05D000007 1.2e-07 61.2 67 35.8
TPR.G39703 Trifolium pratense HOM05D000003 ORTHO05D000007 1.2e-07 61.2 87 35.6
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.2e-07 61.2 143 31.5
BcaB06g27222 Brassica carinata HOM05D000003 ORTHO05D000007 1.6e-07 60.8 68 39.7
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-07 60.8 93 33.3
COL.COLO4_17159 Corchorus olitorius HOM05D000003 ORTHO05D000007 1.6e-07 60.8 170 31.8
Thecc.03G216200 Theobroma cacao HOM05D000003 ORTHO05D000006 1.6e-07 60.8 102 32.4
BcaC01g01935 Brassica carinata HOM05D000003 ORTHO05D000007 2.1e-07 60.5 68 39.7
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.5 93 33.3
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.5 165 27.3
Gorai.011G120600 Gossypium raimondii HOM05D000003 ORTHO05D000007 2.1e-07 60.5 73 35.6
Prupe.4G246900 Prunus persica HOM05D000003 ORTHO05D000007 2.1e-07 60.5 64 39.1
QL04p081254 Quercus lobata HOM05D000003 ORTHO05D000007 2.1e-07 60.5 80 35.0
COL.COLO4_12031 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.7e-07 60.1 165 26.7
Lj3g0015936 Lotus japonicus HOM05D000003 ORTHO05D000007 2.7e-07 60.1 86 34.9
QL02p068766 Quercus lobata HOM05D000003 ORTHO05D000007 2.7e-07 60.1 71 36.6
QL09p023087 Quercus lobata HOM05D000003 ORTHO05D000007 2.7e-07 60.1 166 25.3
TPR.G20742 Trifolium pratense HOM05D000003 ORTHO05D000007 2.7e-07 60.1 90 34.4
Atru.chr9.873 Acer truncatum HOM05D000003 ORTHO05D000007 3.6e-07 59.7 72 36.1
Aa31sc194G20 Aethionema arabicum HOM05D000003 ORTHO05D000007 3.6e-07 59.7 79 38.0
BcaC08g42832 Brassica carinata HOM05D000003 ORTHO05D000007 3.6e-07 59.7 71 38.0
BcaNung02476 Brassica carinata HOM05D000003 ORTHO05D000007 3.6e-07 59.7 74 40.5
COL.COLO4_38451 Corchorus olitorius HOM05D000003 ORTHO05D000007 3.6e-07 59.7 125 32.0
Lj3g0019542 Lotus japonicus HOM05D021482 ORTHO05D000007 3.6e-07 59.7 86 34.9
Prupe.1G179200 Prunus persica HOM05D000003 ORTHO05D000007 3.6e-07 59.7 148 24.3
QL06p049150 Quercus lobata HOM05D000003 ORTHO05D000007 3.6e-07 59.7 65 43.1
TPR.G29549 Trifolium pratense HOM05D000003 ORTHO05D000007 3.6e-07 59.7 68 36.8
Atru.chr9.654 Acer truncatum HOM05D000003 ORTHO05D000007 4.6e-07 59.3 92 29.3
BcaC08g46153 Brassica carinata HOM05D000003 ORTHO05D000007 4.6e-07 59.3 72 41.7
Psat0s4034g0080 Pisum sativum HOM05D000003 ORTHO05D000004 4.6e-07 59.3 76 36.8
BcaC04g22391 Brassica carinata HOM05D000003 ORTHO05D000007 6.1e-07 58.9 74 39.2
BcaC07g41976 Brassica carinata HOM05D000003 ORTHO05D000007 6.1e-07 58.9 89 36.0
C03p14460 Brassica napus HOM05D000003 ORTHO05D000007 6.1e-07 58.9 68 36.8
Hma1.2p1_0773F.1_g216200 Hydrangea macrophylla HOM05D000003 ORTHO05D000007 6.1e-07 58.9 238 27.7
Lj5g0009009 Lotus japonicus HOM05D000003 ORTHO05D000007 6.1e-07 58.9 84 34.5
Atru.chr9.1215 Acer truncatum HOM05D000003 ORTHO05D000006 7.9e-07 58.5 64 37.5
BcaB01g01793 Brassica carinata HOM05D000003 ORTHO05D000007 7.9e-07 58.5 74 39.2
BcaC06g35660 Brassica carinata HOM05D000003 ORTHO05D000007 1.0e-06 58.2 129 28.7
Lj4g0014676 Lotus japonicus HOM05D000003 ORTHO05D000007 1.0e-06 58.2 90 31.1
QL03p025122 Quercus lobata HOM05D000003 ORTHO05D000007 1.0e-06 58.2 69 34.8
TPR.G18288 Trifolium pratense HOM05D000003 ORTHO05D000006 1.0e-06 58.2 129 30.2
Atru.chr4.174 Acer truncatum HOM05D000003 ORTHO05D000007 1.4e-06 57.8 67 37.3
BcaC02g10458 Brassica carinata HOM05D000003 ORTHO05D000007 1.4e-06 57.8 74 39.2
BcaC04g18820 Brassica carinata HOM05D000003 ORTHO05D000007 1.4e-06 57.8 68 36.8
FvH4_2g00621 Fragaria vesca HOM05D010299 ORTHO05D019146 1.4e-06 57.8 134 27.6
Lj1g0010773 Lotus japonicus HOM05D000003 ORTHO05D000007 1.4e-06 57.8 95 31.6
BcaC01g02605 Brassica carinata HOM05D000003 ORTHO05D000007 1.8e-06 57.4 74 39.2
Lj4g0024417 Lotus japonicus HOM05D013113 ORTHO05D000007 1.8e-06 57.4 127 29.9
Prupe.3G109600 Prunus persica HOM05D000003 ORTHO05D000007 1.8e-06 57.4 76 32.9
QL08p027428 Quercus lobata HOM05D022054 ORTHO05D000007 2.3e-06 57.0 71 38.0
CARHR101000 Cardamine hirsuta HOM05D000003 ORTHO05D000007 3.0e-06 56.6 116 30.2
Lj6g0027241 Lotus japonicus HOM05D000473 ORTHO05D000007 3.0e-06 56.6 88 30.7
Psat6g044400 Pisum sativum HOM05D000003 ORTHO05D000007 3.0e-06 56.6 94 31.9
Prupe.3G109300 Prunus persica HOM05D000003 ORTHO05D000007 3.0e-06 56.6 76 32.9
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.9e-06 56.2 87 33.3
Lj3g0019048 Lotus japonicus HOM05D000003 ORTHO05D000007 3.9e-06 56.2 84 31.0
TPR.G15942 Trifolium pratense HOM05D000003 ORTHO05D000007 3.9e-06 56.2 112 27.7
vmacro19234 Vaccinium macrocarpon HOM05D003181 ORTHO05D003689 3.9e-06 56.2 70 34.3
BcaNung01764 Brassica carinata HOM05D000003 ORTHO05D000007 5.1e-06 55.8 151 26.5
COL.COLO4_13283 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.1e-06 55.8 124 32.3
Psat5g160400 Pisum sativum HOM05D000003 ORTHO05D000007 5.1e-06 55.8 166 26.5
TPR.G14379 Trifolium pratense HOM05D000003 ORTHO05D000007 5.1e-06 55.8 70 37.1
TPR.G31733 Trifolium pratense HOM05D000003 ORTHO05D000007 5.1e-06 55.8 137 27.0
Atru.chr10.400 Acer truncatum HOM05D000003 ORTHO05D000007 6.7e-06 55.5 67 31.3
Ciclev10013460m.g Citrus clementina HOM05D000003 ORTHO05D000007 6.7e-06 55.5 74 32.4
Dinv30689 Davidia involucrata HOM05D000003 ORTHO05D000007 6.7e-06 55.5 69 33.3
Lj2g0007178 Lotus japonicus HOM05D000003 ORTHO05D000007 6.7e-06 55.5 86 33.7
TPR.G24718 Trifolium pratense HOM05D000003 ORTHO05D000007 6.7e-06 55.5 70 35.7
TPR.G319 Trifolium pratense HOM05D000003 ORTHO05D000007 6.7e-06 55.5 70 37.1
MELO3C034057.2 Cucumis melo HOM05D000003 ORTHO05D000007 8.8e-06 55.1 64 37.5
Gorai.004G145600 Gossypium raimondii HOM05D000003 ORTHO05D000007 8.8e-06 55.1 69 36.2
Gorai.010G180600 Gossypium raimondii HOM05D000003 ORTHO05D000007 8.8e-06 55.1 82 36.6
Prupe.3G109000 Prunus persica HOM05D000003 ORTHO05D000007 8.8e-06 55.1 76 32.9


User provided reference genes

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