Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 0.0e+00 1679.5 854 100.0
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 7.4e-281 970.7 664 78.6
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 3.7e-272 941.8 665 76.4
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 9.0e-271 937.2 665 76.1
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.7e-245 853.2 664 69.3
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 1.4e-244 850.1 660 70.0
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 5.5e-220 768.5 664 63.1
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 5.7e-132 476.1 640 46.9
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 7.4e-132 475.7 644 47.0
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 4.5e-129 466.5 646 45.7
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 7.7e-129 465.7 684 43.9
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 5.5e-127 459.5 660 45.5
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 7.9e-126 455.7 645 45.4
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.8e-123 447.2 647 45.0
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 2.0e-121 441.0 643 44.5
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.0e-120 438.7 566 46.6
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 1.1e-119 435.3 456 53.3
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 3.2e-119 433.7 442 54.1
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 2.7e-118 430.6 324 69.1
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 2.3e-117 427.6 455 53.4
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 3.0e-117 427.2 342 64.9
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 3.0e-117 427.2 365 61.1
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 1.2e-116 425.2 307 68.7
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 7.5e-116 422.5 342 64.3
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.7e-115 421.4 342 64.3
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 8.2e-115 419.1 308 69.2
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.4e-114 418.3 384 58.9
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 5.3e-114 416.4 305 68.5
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 7.0e-114 416.0 444 52.0
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 4.5e-113 413.3 409 53.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 8.5e-112 409.1 793 38.7
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 2.7e-110 404.1 307 64.5
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 3.6e-110 403.7 439 51.0
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 8.0e-110 402.5 439 51.0
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 1.8e-109 401.4 371 57.7
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 1.8e-109 401.4 647 41.1
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.8e-109 401.4 652 40.2
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 4.0e-109 400.2 418 52.4
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 4.0e-109 400.2 453 50.6
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 5.2e-109 399.8 373 55.8
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 5.2e-109 399.8 430 50.7
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.2e-108 398.7 430 50.9
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.5e-108 398.3 430 50.7
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 1.5e-108 398.3 309 64.7
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 2.0e-108 397.9 418 52.2
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 3.4e-108 397.1 459 47.7
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 4.4e-108 396.7 318 65.1
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 6.3e-107 392.9 642 39.9
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 6.3e-107 392.9 317 64.4
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 8.3e-107 392.5 315 62.2
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 2.4e-106 391.0 454 49.3
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 5.4e-106 389.8 306 63.1
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.0e-105 387.9 308 64.0
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.9e-105 386.3 482 47.9
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.7e-104 384.8 306 62.1
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 3.8e-104 383.6 374 54.8
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 5.0e-104 383.3 318 59.7
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 8.6e-104 382.5 364 54.7
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.1e-103 382.1 636 39.9
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 5.5e-103 379.8 309 60.5
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 7.2e-103 379.4 411 51.3
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 1.2e-102 378.6 396 53.0
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.1e-102 377.9 396 53.0
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 2.8e-102 377.5 306 60.8
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 2.8e-102 377.5 504 45.6
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 6.1e-102 376.3 332 58.4
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 4.0e-101 373.6 308 60.4
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 5.2e-101 373.2 661 39.5
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-100 372.1 311 60.8
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 1.5e-100 371.7 299 64.2
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.5e-100 371.7 308 62.0
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 2.0e-100 371.3 306 60.8
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 2.6e-100 370.9 297 62.6
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 2.8e-99 367.5 318 59.1
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 8.3e-99 365.9 308 59.7
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 8.3e-99 365.9 308 59.7
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 1.4e-98 365.2 365 54.8
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 1.4e-98 365.2 365 54.8
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 1.8e-98 364.8 365 54.8
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 1.8e-98 364.8 308 60.1
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 1.8e-98 364.8 304 59.5
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 3.1e-98 364.0 632 37.8
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 2.7e-97 360.9 349 56.2
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 3.5e-97 360.5 352 55.7
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 4.5e-97 360.1 482 44.6
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 7.8e-97 359.4 367 54.2
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 4.3e-95 353.6 656 37.2
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 9.5e-95 352.4 592 38.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 2.1e-94 351.3 306 58.5
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.8e-93 348.2 303 57.4
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 2.3e-93 347.8 333 55.3
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 5.8e-92 343.2 278 63.3
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 1.3e-91 342.0 371 52.0
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 1.3e-91 342.0 315 57.1
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 1.3e-91 342.0 315 57.1
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.7e-91 341.7 670 37.2
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.2e-91 341.3 306 58.2
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 2.2e-91 341.3 315 57.1
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 3.7e-91 340.5 315 55.6
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.4e-90 337.8 670 37.2
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 7.8e-89 332.8 309 55.7
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 1.3e-88 332.0 315 54.6
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 3.9e-88 330.5 268 60.8
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 5.6e-87 326.6 308 54.5
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-78 298.1 316 48.1
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 2.2e-75 288.1 241 63.9
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 7.1e-74 283.1 316 46.8
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 4.3e-71 273.9 291 51.5
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 2.1e-65 255.0 286 47.2
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.0e-64 252.7 168 72.6
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 6.0e-57 226.9 309 36.9
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 8.7e-56 223.0 172 65.7
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 4.3e-55 220.7 229 48.0
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 2.9e-51 208.0 445 34.4
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 8.4e-51 206.5 272 44.9
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.0e-48 199.5 289 41.2
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.3e-48 199.1 164 60.4
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.1e-37 161.4 113 66.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 3.4e-36 157.9 143 55.9
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 2.1e-33 148.7 144 53.5
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.3e-31 141.4 123 61.0
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 3.2e-26 124.8 483 28.8
Sopen11g019130 Solanum pennellii HOM05D000047 ORTHO05D000589 2.7e-25 121.7 228 38.2
Sopen12g019990 Solanum pennellii HOM05D000017 ORTHO05D000013 1.8e-24 119.0 253 35.6
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 1.5e-23 115.9 126 46.0
Sopen07g019800 Solanum pennellii HOM05D000017 ORTHO05D000013 2.0e-23 115.5 256 34.4
Sopen05g006380 Solanum pennellii HOM05D000017 ORTHO05D000013 7.4e-23 113.6 291 32.3
Sopen06g004330 Solanum pennellii HOM05D000017 ORTHO05D000013 7.4e-23 113.6 291 32.3
Sopen05g013600 Solanum pennellii HOM05D000017 ORTHO05D000013 4.8e-22 110.9 265 33.6
Sopen10g022230 Solanum pennellii HOM05D000017 ORTHO05D000013 4.8e-22 110.9 291 32.0
Sopen09g007640 Solanum pennellii HOM05D000017 ORTHO05D000013 6.3e-22 110.5 288 32.3
Sopen02g001070 Solanum pennellii HOM05D000017 ORTHO05D000013 8.2e-22 110.2 291 32.0
Sopen02g032130 Solanum pennellii HOM05D000629 ORTHO05D000013 8.2e-22 110.2 291 32.0
Sopen06g002940 Solanum pennellii HOM05D000017 ORTHO05D000013 8.2e-22 110.2 291 32.0
Sopen10g005080 Solanum pennellii HOM05D000017 ORTHO05D000013 8.2e-22 110.2 291 32.0
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 2.4e-21 108.6 164 36.0
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.4e-21 108.6 115 54.8
Sopen06g004080 Solanum pennellii HOM05D000017 ORTHO05D000013 9.1e-21 106.7 256 33.2
Sopen02g012130 Solanum pennellii HOM05D000017 ORTHO05D000013 1.2e-20 106.3 261 32.6
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.0e-20 105.5 84 61.9
CAN.G21.27 Capsicum annuum HOM05D000330 ORTHO05D000209 5.9e-20 104.0 74 71.6
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 9.4e-18 96.7 106 48.1
Sopen04g016440 Solanum pennellii HOM05D000017 ORTHO05D000013 3.9e-16 91.3 166 35.5
Sopen01g037270 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-15 89.7 249 32.5
Sopen08g017470 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-15 89.7 249 32.5
Sopen10g020700 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-15 89.7 150 37.3
Sopen11g029160 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-15 89.7 249 32.5
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 1.5e-15 89.4 180 28.9
Sopen07g021550 Solanum pennellii HOM05D000017 ORTHO05D000013 4.4e-15 87.8 150 37.3
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.3e-14 86.3 59 67.8
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.8e-14 85.1 83 54.2
Sopen09g026440 Solanum pennellii HOM05D000017 ORTHO05D000013 4.1e-13 81.3 247 28.7
Nitab4.5_0015150g0010 Nicotiana tabacum HOM05D007248 ORTHO05D002765 3.5e-12 78.2 109 42.2
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 1.7e-11 75.9 57 64.9
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 1.7e-11 75.9 57 64.9
Nitab4.5_0000207g0340 Nicotiana tabacum HOM05D000017 ORTHO05D000013 5.0e-11 74.3 108 39.8
Sopen09g012340 Solanum pennellii HOM05D006864 ORTHO05D000013 2.5e-10 72.0 167 34.1
Sopen03g030620 Solanum pennellii HOM05D000017 ORTHO05D000013 2.1e-09 68.9 135 37.8
Sopen12g022630 Solanum pennellii HOM05D000017 ORTHO05D000013 2.7e-09 68.6 150 31.3
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 3.6e-09 68.2 56 60.7
Sopen12g007420 Solanum pennellii HOM05D000017 ORTHO05D000013 4.7e-09 67.8 150 33.3
CAN.G1138.17 Capsicum annuum HOM05D000330 ORTHO05D000209 8.0e-09 67.0 50 66.0
Sopen09g020250 Solanum pennellii HOM05D000017 ORTHO05D000013 1.8e-08 65.9 150 30.7
Sopen10g008530 Solanum pennellii HOM05D000017 ORTHO05D000013 2.0e-07 62.4 157 31.2
Sopen11g020500 Solanum pennellii HOM05D000017 ORTHO05D000013 9.7e-07 60.1 58 43.1
Sopen01g014170 Solanum pennellii HOM05D000017 ORTHO05D000013 1.7e-06 59.3 189 27.0
Nitab4.5_0011727g0050 Nicotiana tabacum HOM05D000017 ORTHO05D002765 2.2e-06 58.9 109 33.0
Sopen05g022560 Solanum pennellii HOM05D000017 ORTHO05D000013 6.3e-06 57.4 58 48.3


User provided reference genes

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