Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 8.5e-233 810.1 435 100.0
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 8.6e-193 677.2 444 84.0
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 5.7e-189 664.5 465 81.9
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.4e-187 659.1 459 80.4
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 2.4e-187 659.1 433 84.1
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 2.0e-186 656.0 437 81.0
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 1.7e-148 530.0 446 66.8
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 2.3e-145 519.6 444 66.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 3.8e-140 502.3 444 65.8
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 6.0e-138 495.0 445 68.5
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.1e-136 490.7 446 62.8
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.6e-135 486.9 459 63.2
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 2.8e-135 486.1 454 63.0
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.4e-134 483.8 304 87.8
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 5.3e-134 481.9 459 62.7
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.1e-131 474.2 417 65.5
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 4.3e-128 462.2 407 63.6
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 2.4e-126 456.4 453 60.3
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 6.9e-126 454.9 466 58.6
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 9.0e-126 454.5 503 57.3
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 2.0e-125 453.4 464 61.0
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 3.4e-125 452.6 444 64.2
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 3.4e-125 452.6 419 61.8
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 4.5e-125 452.2 439 63.8
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 5.8e-125 451.8 437 60.0
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 3.8e-124 449.1 438 62.8
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.9e-123 446.8 401 68.1
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 7.1e-123 444.9 459 58.8
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 2.7e-122 443.0 445 61.8
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 3.5e-122 442.6 423 63.1
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 4.6e-122 442.2 378 66.1
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 7.9e-122 441.4 453 60.5
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.3e-121 440.7 395 63.5
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.8e-121 440.3 448 61.4
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 2.3e-121 439.9 444 62.2
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 6.7e-121 438.3 415 61.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 1.1e-120 437.6 450 59.3
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 4.3e-120 435.6 448 60.5
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 4.3e-120 435.6 445 59.8
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.3e-119 434.1 418 59.3
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 6.3e-119 431.8 377 65.0
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 8.2e-119 431.4 450 60.7
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.4e-118 430.6 451 56.8
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 1.4e-118 430.6 415 59.3
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 1.8e-118 430.3 442 60.6
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.6e-117 426.4 388 66.0
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 3.4e-117 426.0 400 64.0
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 5.0e-116 422.2 403 60.0
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 6.5e-116 421.8 462 56.7
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 6.5e-116 421.8 440 57.3
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 1.9e-115 420.2 456 57.2
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 4.2e-115 419.1 447 55.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 7.2e-115 418.3 450 57.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 1.2e-114 417.5 375 62.4
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 4.6e-114 415.6 370 64.3
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.8e-113 413.7 379 60.4
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 1.1e-112 411.0 379 60.9
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 1.5e-112 410.6 366 64.5
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.5e-112 410.6 444 55.4
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.3e-112 409.1 460 53.9
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 9.7e-112 407.9 464 54.5
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 1.3e-111 407.5 434 55.5
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-111 407.5 438 55.0
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 1.7e-111 407.1 371 62.0
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 3.4e-109 399.4 452 55.8
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 4.7e-106 389.0 448 52.5
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 6.1e-106 388.7 461 54.2
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.8e-105 387.1 316 71.5
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 2.6e-104 383.3 410 55.6
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.6e-104 383.3 471 51.8
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.7e-103 379.4 450 52.2
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 5.3e-102 375.6 320 69.1
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 1.5e-101 374.0 445 51.2
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 7.7e-101 371.7 451 55.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 1.3e-100 370.9 424 55.0
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.9e-100 369.8 467 51.0
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 5.0e-100 369.0 467 52.7
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 5.0e-100 369.0 467 52.7
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 1.9e-99 367.1 460 52.4
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 2.7e-98 363.2 461 53.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.8e-97 360.5 446 53.4
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 6.7e-97 358.6 381 55.6
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 7.4e-96 355.1 453 50.1
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 8.2e-95 351.7 332 62.0
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 1.1e-94 351.3 455 51.4
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.8e-94 350.5 407 56.3
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 2.4e-94 350.1 453 51.4
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.3e-92 344.4 372 57.3
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 1.3e-92 344.4 458 52.4
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.2e-92 343.6 420 51.9
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 2.2e-92 343.6 380 52.6
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.1e-91 341.3 466 51.1
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 1.9e-91 340.5 310 65.8
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 2.5e-91 340.1 638 39.3
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.6e-90 337.4 420 51.2
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 6.8e-89 332.0 445 52.4
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 8.8e-89 331.6 431 52.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.2e-88 331.3 453 51.4
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.7e-87 327.4 397 50.1
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 5.4e-86 322.4 457 51.0
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.1e-86 321.6 598 41.8
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.1e-86 321.6 598 41.8
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 1.6e-85 320.9 322 62.7
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.6e-85 320.9 365 52.9
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 2.7e-85 320.1 457 51.0
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.7e-84 317.4 363 57.9
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 2.9e-84 316.6 460 49.1
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 3.8e-84 316.2 384 50.8
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.3e-79 301.2 367 54.8
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.8e-79 300.1 318 54.7
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.4e-78 297.7 329 57.4
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 7.7e-77 292.0 457 47.3
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.9e-75 287.3 315 58.7
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.4e-73 281.2 494 41.5
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 1.6e-69 267.7 370 49.7
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 5.9e-69 265.8 360 49.2
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.3e-67 258.8 200 65.5
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 6.8e-65 252.3 216 63.0
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 2.0e-61 240.7 335 52.2
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 1.1e-59 235.0 317 49.2
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 1.1e-59 235.0 365 45.2
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 1.3e-55 221.5 291 48.1
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 5.4e-54 216.1 276 51.1
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 5.6e-51 206.1 119 84.9
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.8e-49 201.1 446 36.1
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 9.2e-46 188.7 102 87.3
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 4.4e-40 169.9 397 36.5
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.4e-39 166.0 324 43.2
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.9e-35 154.5 174 44.8
Sabra04G0057900 Salix brachista HOM05D004969 ORTHO05D006085 3.5e-29 133.7 218 45.4
Hund16636 Selenicereus undatus HOM05D004969 ORTHO05D006085 7.9e-29 132.5 282 40.4
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.9e-28 130.2 67 92.5
Hund31138 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.1e-28 129.8 282 40.8
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.6e-26 124.8 205 44.9
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 6.2e-26 122.9 156 49.4
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.3e-25 119.8 74 81.1
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 6.9e-25 119.4 330 40.9
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 2.0e-24 117.9 261 31.0
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 1.4e-22 111.7 69 82.6
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.4e-22 110.9 64 81.2
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.9e-14 84.7 51 74.5
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 2.5e-14 84.3 47 83.0
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 4.3e-11 73.6 66 59.1
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 1.3e-10 72.0 65 49.2
CARHR196590 Cardamine hirsuta HOM05D004969 ORTHO05D006085 2.1e-10 71.2 141 39.7
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 8.2e-10 69.3 136 40.4
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 4.1e-09 67.0 102 46.1
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 2.0e-08 64.7 138 26.8
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.9e-08 63.2 52 63.5
HPP92_017745 Vanilla planifolia HOM05D004969 ORTHO05D006085 5.9e-08 63.2 88 44.3
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 1.1e-06 58.9 51 54.9


User provided reference genes

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