Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 2822.0 1434 100.0
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 2384.4 1438 85.3
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 2254.6 1463 80.5
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1967.2 1287 79.8
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1793.5 1120 83.1
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1736.1 1480 63.6
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1680.2 1477 61.7
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1643.6 1476 60.8
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1637.1 1473 60.0
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1617.1 1462 60.7
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1611.3 1477 60.1
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1604.7 1464 60.9
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1603.6 1489 59.6
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1602.0 1460 59.8
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1599.3 1471 60.2
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1599.3 1472 58.9
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1598.2 1464 59.6
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1589.3 1457 59.6
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1581.6 1449 59.1
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1565.4 1508 59.0
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1562.4 1451 58.2
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1560.8 1456 58.7
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1556.2 1471 59.1
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1554.7 1461 59.3
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1553.1 1451 58.9
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1548.1 1464 57.9
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1546.9 1467 58.2
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1544.6 1464 57.8
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1544.3 1474 57.4
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1538.9 1467 57.6
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1536.5 1458 59.0
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 1527.7 1462 57.6
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 1523.5 1461 57.2
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1507.3 1499 56.3
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1505.0 1459 57.6
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 1501.5 1499 56.1
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1500.0 1364 60.3
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 1500.0 1462 57.2
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1499.6 1474 57.2
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1498.8 1482 57.0
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1496.1 1472 56.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1496.1 1351 60.0
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1490.7 1461 55.9
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 1490.3 1466 56.7
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1484.5 1466 56.8
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1481.1 1473 57.0
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1470.7 1244 63.3
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1468.4 1538 55.7
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 1463.7 1533 54.6
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1460.3 1400 57.2
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1453.3 1474 55.0
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1452.6 1470 55.4
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1449.1 1469 54.9
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1446.0 1467 55.3
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1443.3 1464 54.9
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1441.8 1481 55.8
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 1430.6 1471 55.2
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1426.8 1480 55.5
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1415.6 1469 54.4
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1412.5 1448 55.8
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1402.1 1476 54.7
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1397.1 1491 54.4
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1385.5 1513 53.5
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1370.1 1435 55.0
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1359.7 1482 54.3
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1355.5 1491 53.1
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1345.9 1482 52.8
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1341.6 1448 53.5
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 0.0e+00 1329.7 922 76.6
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1317.0 1447 52.8
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1316.6 1451 53.1
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1313.5 1455 52.0
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1312.7 1445 52.3
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1303.9 1453 52.1
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1292.7 1457 52.4
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1285.0 1449 50.9
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1283.1 1281 57.1
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1274.6 1460 51.4
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1273.8 1454 50.6
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1271.5 1433 51.6
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1268.8 1435 51.5
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1267.3 1448 50.9
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1267.3 1448 51.2
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1265.4 1438 51.1
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1265.4 1435 51.5
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1263.4 1438 51.0
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1240.3 1283 55.3
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1213.7 1401 49.8
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1207.2 1156 58.1
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1174.1 1068 60.0
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1141.7 914 65.4
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1102.8 1110 55.9
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1075.5 1289 50.1
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 9.8e-312 1073.9 1366 47.1
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 1.1e-305 1053.9 1110 54.3
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 1.0e-279 967.6 521 92.5
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 3.5e-275 952.6 1313 44.3
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 1.6e-264 917.1 1061 50.0
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 4.3e-249 865.9 1519 38.7
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 2.3e-247 860.1 1527 37.6
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.0e-242 844.7 1488 38.0
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 3.0e-226 790.0 1009 48.2
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 3.0e-226 790.0 828 54.1
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 1.3e-216 758.1 1534 34.7
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 1.6e-163 581.6 1842 29.5
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 4.1e-151 540.4 427 66.0
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 4.4e-145 520.4 892 40.0
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.7e-133 481.9 444 58.1
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 3.3e-132 477.6 597 48.7
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 1.4e-130 472.2 588 49.3
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 3.4e-129 467.6 649 45.3
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.1e-119 436.0 439 57.2
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 9.3e-111 406.4 1341 28.1
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 7.4e-84 317.0 212 72.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 8.5e-72 276.9 255 59.6
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 7.2e-71 273.9 336 46.1
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 9.4e-71 273.5 581 37.2
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 5.9e-65 254.2 403 40.4
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.8e-61 242.7 1127 25.6
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.9e-56 225.3 232 53.4
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 3.1e-42 178.7 168 60.1
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 2.3e-29 136.0 91 69.2
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 9.2e-26 124.0 92 66.3
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 3.0e-24 119.0 113 55.8
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 4.7e-22 111.7 94 63.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 3.4e-20 105.5 113 49.6
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.6e-17 96.7 101 53.5
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.5e-17 95.5 85 55.3
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.1e-15 90.5 65 63.1
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 4.3e-15 88.6 59 66.1
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 1.7e-11 76.6 102 48.0
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 3.2e-10 72.4 71 53.5
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 5.1e-08 65.1 84 51.2
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 5.1e-08 65.1 43 69.8
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-07 63.9 62 50.0


User provided reference genes

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