Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 3.4e-119 431.8 235 100.0
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 2.6e-79 299.3 237 78.5
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 9.3e-77 290.8 237 72.2
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 3.7e-73 278.9 239 74.1
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 2.7e-52 209.5 235 58.7
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 8.0e-44 181.4 231 51.5
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 8.5e-38 161.4 175 57.7
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 2.7e-36 156.4 162 58.6
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 4.7e-36 155.6 162 58.0
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.7e-33 147.1 178 54.5
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 2.2e-33 146.7 238 47.5
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 4.5e-31 139.0 212 47.2
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 8.5e-30 134.8 164 49.4
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 1.9e-29 133.7 215 50.2
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 1.9e-29 133.7 152 56.6
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.5e-29 133.3 156 51.9
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 4.2e-29 132.5 167 52.1
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 5.5e-29 132.1 156 50.6
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 1.2e-28 131.0 166 44.0
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 1.6e-28 130.6 168 51.8
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 8.0e-28 128.3 164 47.6
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.0e-27 127.9 166 49.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.4e-27 127.5 164 47.0
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-27 127.1 166 47.6
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.3e-27 126.7 162 48.1
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.8e-27 125.2 158 45.6
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 6.8e-27 125.2 163 49.7
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 6.8e-27 125.2 162 53.1
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 1.2e-26 124.4 162 44.4
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 1.5e-26 124.0 171 46.2
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 1.5e-26 124.0 159 47.2
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 2.0e-26 123.6 159 50.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.6e-26 123.2 158 46.2
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 2.6e-26 123.2 158 46.2
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.4e-26 122.9 159 45.3
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 5.7e-26 122.1 145 49.7
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 7.5e-26 121.7 148 50.0
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 9.8e-26 121.3 162 48.8
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 9.8e-26 121.3 164 46.3
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 1.3e-25 120.9 156 46.8
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 1.3e-25 120.9 163 42.9
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.3e-25 120.9 164 45.7
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.7e-25 120.6 163 46.6
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 3.7e-25 119.4 158 46.2
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 4.9e-25 119.0 164 45.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 4.9e-25 119.0 176 44.9
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 4.9e-25 119.0 157 46.5
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 1.1e-24 117.9 225 42.7
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.8e-24 117.1 156 48.1
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 1.8e-24 117.1 169 48.5
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.8e-24 117.1 167 43.7
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 3.1e-24 116.3 166 42.8
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 4.1e-24 115.9 160 49.4
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 4.1e-24 115.9 161 42.9
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 5.4e-24 115.5 156 46.2
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 4.5e-23 112.5 159 43.4
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 4.5e-23 112.5 223 39.9
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 5.9e-23 112.1 164 43.3
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 7.7e-23 111.7 163 44.2
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 2.9e-22 109.8 217 41.0
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 8.6e-22 108.2 163 44.2
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 8.6e-22 108.2 163 44.2
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 8.6e-22 108.2 181 43.1
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 1.1e-21 107.8 163 41.1
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.9e-21 107.1 200 36.5
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 1.9e-21 107.1 157 45.2
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 4.3e-21 105.9 227 37.9
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 7.3e-21 105.1 168 44.0
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 1.6e-20 104.0 175 42.3
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 2.1e-20 103.6 224 47.3
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 2.1e-20 103.6 166 42.2
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 2.1e-20 103.6 224 46.4
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 2.8e-20 103.2 164 43.3
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 2.8e-20 103.2 154 44.8
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.4e-19 100.9 173 41.0
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.4e-19 100.9 161 41.6
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 1.4e-19 100.9 164 43.3
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.8e-19 100.5 170 44.1
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.3e-19 100.1 175 41.1
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 3.0e-19 99.8 158 45.6
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 1.2e-18 97.8 163 41.7
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-18 97.8 163 41.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-18 97.8 163 41.7
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 1.5e-18 97.4 178 43.3
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.6e-18 96.7 173 39.3
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 4.4e-18 95.9 164 41.5
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 4.4e-18 95.9 172 40.7
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 5.7e-18 95.5 204 38.2
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 7.5e-18 95.1 226 36.7
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 9.8e-18 94.7 152 39.5
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 1.3e-17 94.4 168 41.1
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.3e-17 94.4 168 41.1
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.3e-17 94.4 168 41.1
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 1.3e-17 94.4 163 38.7
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 1.7e-17 94.0 176 41.5
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 1.7e-17 94.0 163 39.9
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 1.7e-17 94.0 152 39.5
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 1.7e-17 94.0 163 39.9
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 2.2e-17 93.6 164 38.4
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 2.9e-17 93.2 161 40.4
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 8.3e-17 91.7 167 37.7
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 8.3e-17 91.7 153 41.8
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 1.1e-16 91.3 165 39.4
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 1.8e-16 90.5 155 38.1
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 1.8e-16 90.5 168 41.1
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 2.4e-16 90.1 166 39.2
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.4e-16 90.1 163 38.0
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 3.2e-16 89.7 155 40.6
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 4.1e-16 89.4 163 38.7
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 4.1e-16 89.4 163 38.7
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 7.0e-16 88.6 185 38.4
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 7.0e-16 88.6 178 37.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.2e-15 87.8 155 38.1
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.2e-15 87.8 168 37.5
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.6e-15 87.4 175 37.7
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 2.0e-15 87.0 169 37.9
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 2.7e-15 86.7 149 38.3
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 1.3e-14 84.3 162 38.9
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 5.0e-14 82.4 154 37.7
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 5.0e-14 82.4 140 43.6
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 8.6e-14 81.6 162 35.2
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 1.9e-13 80.5 157 38.2
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 1.9e-13 80.5 213 36.2
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 2.5e-13 80.1 158 38.0
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 5.6e-13 79.0 135 42.2
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 1.6e-12 77.4 162 35.8
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.6e-12 77.4 212 32.1
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 8.0e-12 75.1 155 36.8
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 8.0e-12 75.1 149 42.3
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 3.1e-11 73.2 135 37.0
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 4.0e-11 72.8 162 32.7
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 8.9e-11 71.6 158 32.9
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.0e-10 70.5 212 30.7
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 5.4e-08 62.4 143 42.0
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 7.0e-08 62.0 144 34.7
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.2e-07 61.2 123 40.7
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 2.7e-07 60.1 143 37.8
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 6.0e-07 58.9 148 31.8
Aa31LG7G6580 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.7e-06 57.4 168 29.8
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 1.7e-06 57.4 156 30.8
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 3.9e-06 56.2 171 30.4


User provided reference genes

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