Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 2348.9 1186 100.0
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 2238.4 1186 94.7
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 2236.8 1186 94.8
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2206.8 1203 92.7
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 2172.1 1185 92.4
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 2145.5 1219 89.9
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1915.2 1201 80.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1881.7 1204 79.8
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1874.8 1201 79.4
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1867.0 1204 79.2
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1835.1 1205 77.1
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1833.5 1205 77.0
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1831.2 1205 77.7
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1828.9 1200 76.9
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1823.5 1205 76.7
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1821.2 1198 76.5
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1817.4 1205 76.3
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1808.5 1201 77.7
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1806.2 1203 76.1
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1799.3 1286 73.4
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1797.7 1197 76.4
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1795.8 1201 75.4
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1792.3 1204 75.5
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1790.8 1289 72.8
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1790.8 1289 72.8
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1784.2 1201 75.7
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1782.7 1200 75.5
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1780.4 1200 75.5
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1769.2 1203 74.5
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1768.4 1201 74.6
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1766.9 1197 74.7
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 1766.5 1203 74.7
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1765.7 1199 74.6
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 1763.0 1199 74.3
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1762.7 1201 74.6
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1758.8 1198 74.7
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1758.0 1201 74.1
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1757.7 1201 74.2
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1757.3 1296 70.2
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1756.5 1199 74.6
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1193 74.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1750.3 1203 73.7
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1748.4 1194 73.9
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 1746.1 1204 73.6
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1195 74.2
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1744.6 1188 74.0
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1742.2 1195 74.2
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1742.2 1195 74.2
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1741.9 1200 73.8
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1741.1 1195 74.1
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1741.1 1196 74.2
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1740.3 1197 74.4
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 1739.2 1200 74.5
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1738.4 1218 72.7
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1732.2 1202 73.9
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1732.2 1204 73.3
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1731.1 1195 73.8
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1730.3 1218 72.8
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1722.6 1196 72.8
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1722.6 1218 72.3
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1720.7 1194 73.5
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1720.7 1346 69.1
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 1719.9 1196 73.4
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1718.7 1194 73.5
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1718.4 1202 73.5
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1718.4 1211 72.2
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 1718.0 1205 73.1
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1711.0 1194 73.1
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1709.1 1199 72.6
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1708.7 1194 72.8
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 1707.6 1199 72.5
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 1706.0 1198 72.9
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1705.3 1195 72.2
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1699.1 1194 72.3
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1696.4 1129 77.1
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1693.7 1194 72.3
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1684.8 1183 72.0
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1682.9 1205 71.0
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1658.7 1210 69.3
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1647.5 1186 71.9
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1644.4 1097 77.0
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1642.9 1200 70.8
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1639.0 1206 71.3
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1627.1 1200 70.4
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1600.5 1212 67.9
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1567.0 1198 68.2
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1538.5 1192 65.7
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1512.7 1047 73.2
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1508.8 1047 73.4
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1500.7 1040 74.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1496.5 1192 64.4
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1493.8 1012 75.6
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1471.4 1206 63.6
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1444.5 1023 72.9
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1408.7 994 73.0
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1407.1 978 73.5
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1406.0 983 73.3
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1392.5 1052 67.1
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1356.3 897 77.7
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1298.9 827 78.5
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1292.7 932 71.8
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1261.1 871 72.1
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1258.4 1211 54.5
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1177.5 1225 51.5
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1093.6 903 63.6
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.6e-310 1069.7 1209 48.6
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 2.9e-304 1048.9 1209 48.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.3e-271 938.7 1185 45.0
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 2.0e-268 929.9 1323 41.5
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 1.5e-247 860.5 518 84.6
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 2.5e-242 843.2 1224 41.0
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.5e-227 792.0 1132 41.3
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 4.4e-191 672.9 424 80.9
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.3e-147 527.7 484 61.4
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.4e-144 518.5 738 43.0
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.6e-140 505.0 324 76.2
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 3.0e-139 500.7 306 78.8
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 3.3e-138 497.3 429 61.3
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 5.9e-127 459.9 323 70.0
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.2e-124 452.2 347 68.0
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 3.9e-115 420.6 292 74.3
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-113 414.1 328 68.9
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 1.5e-101 375.6 314 63.1
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 6.7e-99 366.7 361 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 6.5e-86 323.6 312 51.9
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.6e-84 318.9 256 65.2
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 7.3e-77 293.5 383 46.0
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 4.0e-59 234.6 262 51.9
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 5.2e-59 234.2 161 70.8
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 2.7e-47 195.3 124 77.4
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 6.6e-46 190.7 139 64.0
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 1.2e-44 186.4 113 75.2
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 2.1e-44 185.7 116 73.3
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.0e-42 179.1 165 55.2
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 1.3e-41 176.4 203 54.2
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 2.1e-39 169.1 727 25.6
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.3e-37 161.8 256 39.8
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.1e-36 159.1 191 48.2
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 2.7e-31 142.1 163 52.1
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.0e-30 140.2 81 81.5
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 7.6e-26 124.0 165 43.0
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.1e-19 102.1 74 63.5
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 1.2e-15 90.1 59 69.5
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.0e-14 87.0 62 69.4
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.1e-13 83.6 232 31.9
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 2.2e-12 79.3 47 72.3
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.6e-10 72.4 48 62.5
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 4.5e-10 71.6 74 63.5
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 4.5e-10 71.6 74 63.5
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 5.9e-10 71.2 60 70.0
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 1.0e-09 70.5 55 61.8
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.7e-09 69.7 70 55.7
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 9.4e-08 63.9 38 73.7


User provided reference genes

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