Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 4.5e-39 164.1 80 100.0
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.7e-36 154.8 80 93.8
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.7e-36 154.8 80 93.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.9e-36 153.3 80 92.5
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-32 142.9 80 85.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 5.3e-32 140.6 80 85.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.4e-31 137.9 80 83.8
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 3.4e-31 137.9 77 83.1
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 6.5e-30 133.7 81 81.5
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 4.6e-28 127.5 79 79.7
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.5e-26 121.7 79 75.9
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.3e-26 121.3 79 75.9
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 9.7e-26 119.8 69 84.1
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 3.7e-25 117.9 81 69.1
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 1.1e-24 116.3 82 69.5
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.4e-24 115.9 80 67.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 4.1e-24 114.4 80 68.8
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 67.9
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 6.9e-24 113.6 80 66.2
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 66.7
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 1.5e-23 112.5 81 66.7
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 66.7
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 66.7
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 69.1
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 69.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.6e-23 111.7 81 65.4
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.6e-23 111.7 81 65.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.6e-23 111.7 81 65.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 3.4e-23 111.3 81 64.2
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 4.5e-23 110.9 81 64.2
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 5.9e-23 110.5 79 64.6
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 66.7
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 65.4
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 7.7e-23 110.2 80 66.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.0e-22 109.8 81 63.0
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.7e-22 109.0 81 63.0
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 2.2e-22 108.6 98 59.2
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.2e-22 108.6 80 63.8
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 2.2e-22 108.6 81 65.4
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.8e-22 107.8 81 64.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 6.5e-22 107.1 81 64.2
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 8.5e-22 106.7 81 66.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 8.5e-22 106.7 77 63.6
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 8.5e-22 106.7 80 62.5
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 61.7
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 67.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.4e-21 105.9 81 61.7
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 62.5
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.9e-21 105.5 80 62.5
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.9e-21 105.5 82 61.0
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.2e-21 104.8 80 61.2
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.2e-21 104.8 80 61.2
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.2e-21 104.4 79 59.5
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 9.4e-21 103.2 81 63.0
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 1.2e-20 102.8 81 60.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.2e-20 102.8 81 58.0
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.2e-20 102.8 83 59.0
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.6e-20 102.4 80 57.5
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.6e-20 102.4 80 58.8
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.1e-20 102.1 78 61.5
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 2.1e-20 102.1 81 60.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 2.7e-20 101.7 81 60.5
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.7e-20 101.7 81 64.2
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.7e-20 101.7 81 59.3
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.7e-20 101.7 82 64.6
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 3.6e-20 101.3 81 63.0
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.6e-20 101.3 79 63.3
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 6.1e-20 100.5 81 63.0
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 7.9e-20 100.1 80 60.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.0e-19 99.8 73 67.1
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 1.0e-19 99.8 79 60.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.0e-19 99.8 74 62.2
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.4e-19 99.4 80 60.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.8e-19 99.0 81 55.6
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.8e-19 99.0 80 60.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.8e-19 99.0 80 58.8
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 1.8e-19 99.0 81 60.5
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 2.3e-19 98.6 80 60.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.3e-19 98.6 80 61.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.3e-19 98.6 57 75.4
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 2.3e-19 98.6 81 61.7
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 3.0e-19 98.2 81 58.0
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.9e-19 97.8 62 67.7
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 3.9e-19 97.8 51 80.4
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 5.1e-19 97.4 57 73.7
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 6.7e-19 97.1 62 67.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 6.7e-19 97.1 81 56.8
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 8.8e-19 96.7 60 73.3
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 8.8e-19 96.7 60 68.3
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.8e-19 96.7 81 55.6
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.1e-18 96.3 53 77.4
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-18 96.3 78 53.8
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.1e-18 96.3 81 61.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.5e-18 95.9 59 69.5
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.5e-18 95.9 80 60.0
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.5e-18 95.9 73 60.3
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 2.0e-18 95.5 67 67.2
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 2.0e-18 95.5 50 84.0
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 2.0e-18 95.5 62 64.5
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.0e-18 95.5 80 55.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.6e-18 95.1 60 70.0
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.6e-18 95.1 53 75.5
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 2.6e-18 95.1 70 62.9
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 3.3e-18 94.7 60 71.7
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.3e-18 94.7 52 76.9
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 3.3e-18 94.7 51 78.4
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 4.4e-18 94.4 81 63.0
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 5.7e-18 94.0 80 60.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 5.7e-18 94.0 80 60.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 5.7e-18 94.0 80 60.0
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 5.7e-18 94.0 66 65.2
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 5.7e-18 94.0 56 73.2
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 9.7e-18 93.2 60 70.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 9.7e-18 93.2 60 70.0
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.7e-18 93.2 73 58.9
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 9.7e-18 93.2 73 58.9
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 9.7e-18 93.2 71 60.6
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.3e-17 92.8 80 55.0
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.3e-17 92.8 82 54.9
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 2.2e-17 92.0 58 72.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.2e-17 92.0 67 65.7
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 2.2e-17 92.0 76 57.9
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 2.8e-17 91.7 80 56.2
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 2.8e-17 91.7 80 56.2
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.8e-17 91.7 69 60.9
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 2.8e-17 91.7 65 67.7
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 4.8e-17 90.9 67 65.7
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 4.8e-17 90.9 51 72.5
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 4.8e-17 90.9 51 76.5
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 6.3e-17 90.5 51 76.5
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 6.3e-17 90.5 60 68.3
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.2e-17 90.1 49 81.6
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.1e-16 89.7 57 71.9
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.1e-16 89.7 57 71.9
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.8e-16 89.0 51 76.5
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.4e-16 88.6 53 75.5
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 4.1e-16 87.8 56 66.1
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 4.1e-16 87.8 56 66.1
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 4.1e-16 87.8 71 56.3
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 7.0e-16 87.0 46 76.1
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.2e-15 86.3 47 72.3
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.2e-15 86.3 82 51.2
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.6e-15 85.9 71 57.7
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.6e-15 85.9 43 83.7
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 3.5e-15 84.7 57 66.7
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 3.5e-15 84.7 57 66.7
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.7e-14 82.4 42 78.6
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 8.5e-14 80.1 71 53.5
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 7.2e-13 77.0 42 71.4
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.6e-12 75.9 42 71.4
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 1.1e-10 69.7 57 59.6
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 2.0e-10 68.9 52 63.5
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 2.0e-07 58.9 61 47.5


User provided reference genes

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