Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1975.2 Capsicum annuum HOM05D000116 ORTHO05D115871 6.9e-50 200.3 98 100.0
CAN.G529.64 Capsicum annuum HOM05D000116 ORTHO05D015552 6.3e-11 70.9 110 39.1
CAN.G529.66 Capsicum annuum HOM05D000116 ORTHO05D015552 4.1e-10 68.2 109 38.5
Solyc02g077580.1 Solanum lycopersicum HOM05D000116 ORTHO05D015552 7.0e-10 67.4 100 40.0
Sopen02g022470 Solanum pennellii HOM05D000116 ORTHO05D015552 1.2e-09 66.6 100 40.0
arahy.Tifrunner.gnm1.ann1.UE7BNI Arachis hypogaea HOM05D000116 ORTHO05D002933 1.6e-09 66.2 95 34.7
arahy.Tifrunner.gnm1.ann1.W8TIS9 Arachis hypogaea HOM05D000116 ORTHO05D002933 1.6e-09 66.2 95 34.7
CAN.G529.71 Capsicum annuum HOM05D000116 ORTHO05D015552 2.0e-09 65.9 110 37.3
Medtr2g090755 Medicago truncatula HOM05D000116 ORTHO05D002933 2.7e-09 65.5 97 37.1
COL.COLO4_07344 Corchorus olitorius HOM05D000116 ORTHO05D002933 4.5e-09 64.7 101 36.6
unitig_26.g9355 Utricularia gibba HOM05D000116 ORTHO05D002933 1.0e-08 63.5 99 35.4
Medtr2g014760 Medicago truncatula HOM05D000116 ORTHO05D002933 1.3e-08 63.2 98 35.7
Psat1g201360 Pisum sativum HOM05D000116 ORTHO05D002933 1.3e-08 63.2 100 35.0
QL08p040721 Quercus lobata HOM05D000116 ORTHO05D002933 1.3e-08 63.2 98 35.7
HanXRQChr17g0554931 Helianthus annuus HOM05D000116 ORTHO05D002933 1.7e-08 62.8 106 34.0
Lalb_Chr01g0005861 Lupinus albus HOM05D000116 ORTHO05D002933 1.7e-08 62.8 104 36.5
TPR.G11794 Trifolium pratense HOM05D000116 ORTHO05D002933 1.7e-08 62.8 97 34.0
Gohir.A03G154200 Gossypium hirsutum HOM05D000116 ORTHO05D002933 2.2e-08 62.4 105 35.2
Gohir.D02G177100 Gossypium hirsutum HOM05D000116 ORTHO05D002933 2.2e-08 62.4 105 35.2
Gorai.005G198800 Gossypium raimondii HOM05D000116 ORTHO05D002933 2.2e-08 62.4 105 35.2
CSS0005014 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 2.9e-08 62.0 103 36.9
CSS0018532 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 2.9e-08 62.0 103 36.9
Glyma.12G207400 Glycine max HOM05D000116 ORTHO05D002933 2.9e-08 62.0 103 32.0
Rhsim06G0136100 Rhododendron simsii HOM05D000116 ORTHO05D002933 2.9e-08 62.0 105 34.3
THA.LOC104812618 Tarenaya hassleriana HOM05D000116 ORTHO05D002933 2.9e-08 62.0 97 36.1
CAN.G529.68 Capsicum annuum HOM05D000116 ORTHO05D115663 3.8e-08 61.6 118 34.7
Lsat_1_v5_gn_8_137081 Lactuca sativa HOM05D000116 ORTHO05D002933 3.8e-08 61.6 106 34.9
CiPaw.09G064300 Carya illinoinensis HOM05D000116 ORTHO05D002933 5.0e-08 61.2 104 32.7
Medtr4g079110 Medicago truncatula HOM05D000116 ORTHO05D002933 5.0e-08 61.2 99 36.4
Psat7g136880 Pisum sativum HOM05D000116 ORTHO05D002933 5.0e-08 61.2 98 36.7
Sabra17G0013500 Salix brachista HOM05D000116 ORTHO05D002933 5.0e-08 61.2 100 34.0
Dinv06848 Davidia involucrata HOM05D000116 ORTHO05D002933 6.5e-08 60.8 103 34.0
Thhalv10009080m.g Eutrema salsugineum HOM05D000116 ORTHO05D002933 6.5e-08 60.8 101 36.6
Glyma.13G293700 Glycine max HOM05D000116 ORTHO05D002933 6.5e-08 60.8 104 32.7
Nitab4.5_0006740g0020 Nicotiana tabacum HOM05D000116 ORTHO05D002933 6.5e-08 60.8 99 33.3
Ca_01480_v3 Cicer arietinum L. HOM05D000116 ORTHO05D002933 8.5e-08 60.5 101 34.7
Glyma.06G287000 Glycine max HOM05D000116 ORTHO05D002933 8.5e-08 60.5 105 35.2
Manes.13G141400 Manihot esculenta HOM05D000116 ORTHO05D002933 8.5e-08 60.5 108 31.5
Thecc.02G187600 Theobroma cacao HOM05D000116 ORTHO05D002933 8.5e-08 60.5 102 33.3
Atru.chr10.1778 Acer truncatum HOM05D000116 ORTHO05D002933 1.1e-07 60.1 105 34.3
CAN.G529.72 Capsicum annuum HOM05D000116 ORTHO05D015552 1.1e-07 60.1 94 39.4
Duzib132G1006 Durio zibethinus HOM05D000116 ORTHO05D002933 1.1e-07 60.1 100 33.0
Phvul.005G099700 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 1.1e-07 60.1 104 33.7
SalBow7G1317 Salvia bowleyana HOM05D000116 ORTHO05D002933 1.1e-07 60.1 99 31.3
SalBow7G1662 Salvia bowleyana HOM05D000116 ORTHO05D002933 1.1e-07 60.1 99 31.3
TPR.G14250 Trifolium pratense HOM05D000006 ORTHO05D000001 1.1e-07 60.1 100 34.0
CAN.G529.67 Capsicum annuum HOM05D000116 ORTHO05D015552 1.5e-07 59.7 106 36.8
Sabra07G0109300 Salix brachista HOM05D000116 ORTHO05D002933 1.5e-07 59.7 106 31.1
TWI59G1029 Tripterygium wilfordii HOM05D000116 ORTHO05D002933 1.5e-07 59.7 95 34.7
CiPaw.04G129400 Carya illinoinensis HOM05D000116 ORTHO05D002933 1.9e-07 59.3 99 36.4
Ca_18915_v3 Cicer arietinum L. HOM05D000116 ORTHO05D002933 1.9e-07 59.3 103 34.0
Glyma.12G119200 Glycine max HOM05D000116 ORTHO05D002933 1.9e-07 59.3 105 34.3
Oeu016004.1 Olea europaea HOM05D000116 ORTHO05D002933 1.9e-07 59.3 102 33.3
Dinv04585 Davidia involucrata HOM05D000116 ORTHO05D002933 2.5e-07 58.9 102 32.4
Lj8P107T31 Lonicera japonica HOM05D000116 ORTHO05D002933 2.5e-07 58.9 98 32.7
HPP92_026779 Vanilla planifolia HOM05D000116 ORTHO05D004279 2.5e-07 58.9 99 32.3
A10p02380 Brassica napus HOM05D000116 ORTHO05D002933 3.2e-07 58.5 92 34.8
BraA10t42507Z Brassica rapa HOM05D000116 ORTHO05D002933 3.2e-07 58.5 92 34.8
Duzib235G0691 Durio zibethinus HOM05D000116 ORTHO05D002933 3.2e-07 58.5 100 34.0
Duzib248G0911 Durio zibethinus HOM05D000116 ORTHO05D002933 3.2e-07 58.5 100 33.0
MD10G1288100 Malus domestica HOM05D000116 ORTHO05D002933 3.2e-07 58.5 105 32.4
Aa31LG6G11000 Aethionema arabicum HOM05D000116 ORTHO05D002933 4.2e-07 58.2 99 33.3
ClCG02G010280 Citrullus lanatus HOM05D000116 ORTHO05D002933 4.2e-07 58.2 100 35.0
Hma1.2p1_1658F.1_g296090 Hydrangea macrophylla HOM05D000116 ORTHO05D002933 4.2e-07 58.2 106 33.0
Phvul.006G181300 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 4.2e-07 58.2 97 33.0
Psat5g274680 Pisum sativum HOM05D000116 ORTHO05D002933 4.2e-07 58.2 97 37.1
Potri.007G134800 Populus trichocarpa HOM05D000116 ORTHO05D002933 4.2e-07 58.2 105 31.4
TWI14G0430 Tripterygium wilfordii HOM05D000116 ORTHO05D002933 4.2e-07 58.2 98 32.7
CARHR027970 Cardamine hirsuta HOM05D000116 ORTHO05D002933 5.5e-07 57.8 99 32.3
VMungo0540G0641 Vigna mungo HOM05D000116 ORTHO05D002933 5.5e-07 57.8 97 33.0
BcaC06g35374 Brassica carinata HOM05D000116 ORTHO05D002933 7.2e-07 57.4 101 35.6
A07p11160 Brassica napus HOM05D000116 ORTHO05D002933 7.2e-07 57.4 101 36.6
C07p16830 Brassica napus HOM05D000116 ORTHO05D002933 7.2e-07 57.4 101 35.6
CANSAT64G2976 Cannabis sativa HOM05D000116 ORTHO05D002933 7.2e-07 57.4 102 32.4
Duzib160G0485 Durio zibethinus HOM05D000116 ORTHO05D002933 7.2e-07 57.4 105 33.3
RcHm_v2.0_Chr5g0009361 Rosa chinensis HOM05D000116 ORTHO05D002933 7.2e-07 57.4 107 31.8
TPR.G6497 Trifolium pratense HOM05D000116 ORTHO05D002933 7.2e-07 57.4 106 34.9
BolC7t42190H Brassica oleracea HOM05D000116 ORTHO05D002933 9.4e-07 57.0 101 34.7
FvH4_3g08470 Fragaria vesca HOM05D000116 ORTHO05D002933 9.4e-07 57.0 109 31.2
FAN16G3035 Fragaria x ananassa HOM05D000116 ORTHO05D002933 9.4e-07 57.0 109 31.2
FAN21G2173 Fragaria x ananassa HOM05D000116 ORTHO05D002933 9.4e-07 57.0 109 31.2
FAN25G1490 Fragaria x ananassa HOM05D000116 ORTHO05D002933 9.4e-07 57.0 109 31.2
Glyma.13G234500 Glycine max HOM05D000116 ORTHO05D002933 9.4e-07 57.0 98 35.7
Prupe.4G053500 Prunus persica HOM05D000116 ORTHO05D002933 9.4e-07 57.0 105 32.4
MSTRG.13208 Avicennia marina HOM05D000116 ORTHO05D002933 1.2e-06 56.6 105 29.5
MSTRG.15843 Avicennia marina HOM05D000116 ORTHO05D002933 1.2e-06 56.6 101 31.7
BcaB03g13925 Brassica carinata HOM05D000116 ORTHO05D002933 1.2e-06 56.6 101 34.7
MELO3C019326.2 Cucumis melo HOM05D000116 ORTHO05D002933 1.2e-06 56.6 100 34.0
Glyma.15G078600 Glycine max HOM05D000116 ORTHO05D002933 1.2e-06 56.6 97 33.0
Lalb_Chr24g0399991 Lupinus albus HOM05D000116 ORTHO05D002933 1.2e-06 56.6 108 30.6
MD05G1309500 Malus domestica HOM05D000116 ORTHO05D002933 1.2e-06 56.6 105 32.4
PSO541G1355 Papaver somniferum HOM05D000116 ORTHO05D002933 1.2e-06 56.6 107 32.7
PSO675G6594 Papaver somniferum HOM05D000116 ORTHO05D002933 1.2e-06 56.6 113 31.0
Phvul.011G122900 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 1.2e-06 56.6 100 35.0
AT1G28480 Arabidopsis thaliana HOM05D000116 ORTHO05D002933 1.6e-06 56.2 96 33.3
Thhalv10008980m.g Eutrema salsugineum HOM05D000116 ORTHO05D002933 1.6e-06 56.2 92 37.0
Hma1.2p1_0002F.1_g002340 Hydrangea macrophylla HOM05D000116 ORTHO05D002933 1.6e-06 56.2 99 34.3
Potri.017G017300 Populus trichocarpa HOM05D000116 ORTHO05D002933 1.6e-06 56.2 102 32.4
unitig_749.g13660 Utricularia gibba HOM05D000116 ORTHO05D002933 1.6e-06 56.2 99 31.3
AL1G13430 Arabidopsis lyrata HOM05D000116 ORTHO05D002933 2.1e-06 55.8 88 33.0
C05p02200 Brassica napus HOM05D000116 ORTHO05D002933 2.1e-06 55.8 92 33.7
Carub.0001s0299 Capsella rubella HOM05D000116 ORTHO05D002933 2.1e-06 55.8 90 36.7
Ca_00373_v3 Cicer arietinum L. HOM05D000116 ORTHO05D002933 2.1e-06 55.8 96 31.2
Ca_29787_v3 Cicer arietinum L. HOM05D000116 ORTHO05D002933 2.1e-06 55.8 96 31.2
Ciclev10017106m.g Citrus clementina HOM05D000116 ORTHO05D002933 2.1e-06 55.8 102 36.3
Nitab4.5_0006091g0010 Nicotiana tabacum HOM05D000116 ORTHO05D002933 2.1e-06 55.8 105 31.4
Oeu001097.1 Olea europaea HOM05D000116 ORTHO05D002933 2.1e-06 55.8 107 33.6
SMO329G0099 Selaginella moellendorffii HOM05D000116 ORTHO05D002933 2.1e-06 55.8 91 39.6
SMO358G0061 Selaginella moellendorffii HOM05D000116 ORTHO05D000133 2.1e-06 55.8 97 32.0
THA.LOC104814233 Tarenaya hassleriana HOM05D000116 ORTHO05D002933 2.1e-06 55.8 101 32.7
Aqoxy4G00599 Aquilegia oxysepala HOM05D000116 ORTHO05D002933 2.7e-06 55.5 107 30.8
BcaC05g24496 Brassica carinata HOM05D000116 ORTHO05D002933 2.7e-06 55.5 92 33.7
BolC5t28998H Brassica oleracea HOM05D000116 ORTHO05D002933 2.7e-06 55.5 92 33.7
Cfa000536 Carpinus fangiana HOM05D000116 ORTHO05D002933 2.7e-06 55.5 105 34.3
PGR042G3110 Punica granatum HOM05D000116 ORTHO05D002933 2.7e-06 55.5 104 29.8
Sp1g02710 Schrenkiella parvula HOM05D000116 ORTHO05D002933 2.7e-06 55.5 93 34.4
Sed0022480 Sechium edule HOM05D000116 ORTHO05D004279 2.7e-06 55.5 95 32.6
Solyc10g008930.1 Solanum lycopersicum HOM05D000116 ORTHO05D002933 2.7e-06 55.5 107 29.9
BraA07t28907Z Brassica rapa HOM05D000116 ORTHO05D002933 3.6e-06 55.1 101 35.6
CSS0047198 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 3.6e-06 55.1 93 34.4
CSS0048516 Camellia sinensis var. sinensis HOM05D000116 ORTHO05D002933 3.6e-06 55.1 102 29.4
Carub.0001s2695 Capsella rubella HOM05D000116 ORTHO05D002933 3.6e-06 55.1 99 32.3
COL.COLO4_30077 Corchorus olitorius HOM05D000116 ORTHO05D000703 3.6e-06 55.1 93 33.3
COL.COLO4_31405 Corchorus olitorius HOM05D000116 ORTHO05D002933 3.6e-06 55.1 102 35.3
Lj3g0025554 Lotus japonicus HOM05D000116 ORTHO05D002933 3.6e-06 55.1 98 32.7
MBI16_g39221_MAGBIO Magnolia biondii HOM05D000116 ORTHO05D000703 3.6e-06 55.1 93 33.3
MD14G1176900 Malus domestica HOM05D000116 ORTHO05D000703 3.6e-06 55.1 97 34.0
Rhsim13G0180700 Rhododendron simsii HOM05D000116 ORTHO05D002933 3.6e-06 55.1 99 31.3
Cfa014670 Carpinus fangiana HOM05D000116 ORTHO05D002933 4.7e-06 54.7 97 32.0
Haze_13263 Corylus avellana HOM05D000116 ORTHO05D002933 4.7e-06 54.7 97 34.0
CsaV3_2G034500 Cucumis sativus L. HOM05D000116 ORTHO05D002933 4.7e-06 54.7 94 35.1
Gohir.D05G161000 Gossypium hirsutum HOM05D000116 ORTHO05D002933 4.7e-06 54.7 98 31.6
Gorai.009G166200 Gossypium raimondii HOM05D000116 ORTHO05D002933 4.7e-06 54.7 98 31.6
Oeu050238.1 Olea europaea HOM05D000116 ORTHO05D002933 4.7e-06 54.7 106 34.0
Peaxi162Scf00189g00003 Petunia axillaris HOM05D000116 ORTHO05D002933 4.7e-06 54.7 105 30.5
VMungo1127G0877 Vigna mungo HOM05D000116 ORTHO05D002933 4.7e-06 54.7 100 33.0
Zm00001eb141960 Zea mays HOM05D000116 ORTHO05D000133 4.7e-06 54.7 97 34.0
AUR62010385 Chenopodium quinoa HOM05D000116 ORTHO05D000133 6.1e-06 54.3 94 31.9
Haze_06364 Corylus avellana HOM05D000116 ORTHO05D002933 6.1e-06 54.3 106 30.2
MELO3C007253.2 Cucumis melo HOM05D000116 ORTHO05D002933 6.1e-06 54.3 96 31.2
MELO3C010749.2 Cucumis melo HOM05D000116 ORTHO05D004279 6.1e-06 54.3 95 34.7
Dinv27998 Davidia involucrata HOM05D000116 ORTHO05D004279 6.1e-06 54.3 96 34.4
Eucgr.A01868 Eucalyptus grandis HOM05D000116 ORTHO05D002933 6.1e-06 54.3 96 33.3
Gohir.A05G158400 Gossypium hirsutum HOM05D000116 ORTHO05D002933 6.1e-06 54.3 98 32.7
SGA_v2.0_scaffold309G48167 Striga asiatica HOM05D000116 ORTHO05D002933 6.1e-06 54.3 98 32.7
VMungo1080G0708 Vigna mungo HOM05D000116 ORTHO05D002933 6.1e-06 54.3 102 32.4
Aa31LG11G640 Aethionema arabicum HOM05D000116 ORTHO05D000703 8.0e-06 53.9 89 36.0
Ah.01g018790 Amaranthus hybridus HOM05D000116 ORTHO05D000133 8.0e-06 53.9 94 27.7
A09p37560 Brassica napus HOM05D000116 ORTHO05D002933 8.0e-06 53.9 103 31.1
BraA09t39267Z Brassica rapa HOM05D000116 ORTHO05D002933 8.0e-06 53.9 103 31.1
CDE02G2079 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 8.0e-06 53.9 93 34.4
Ciclev10017057m.g Citrus clementina HOM05D000116 ORTHO05D002933 8.0e-06 53.9 111 31.5
Migut.H01466 Erythranthe guttata HOM05D000116 ORTHO05D002933 8.0e-06 53.9 96 30.2
Os01g0667900 Oryza sativa ssp. japonica HOM05D000116 ORTHO05D002933 8.0e-06 53.9 97 34.0
Phvul.003G290400 Phaseolus vulgaris HOM05D000116 ORTHO05D002933 8.0e-06 53.9 99 30.3
PGR042G3500 Punica granatum HOM05D000116 ORTHO05D002933 8.0e-06 53.9 95 35.8
HPP92_000496 Vanilla planifolia HOM05D000116 ORTHO05D002933 8.0e-06 53.9 94 34.0


User provided reference genes

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