Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 1.3e-254 882.5 430 100.0
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 5.3e-219 764.2 430 88.1
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 6.4e-217 757.3 405 90.6
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.7e-215 751.9 419 88.1
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 8.2e-204 713.8 411 86.1
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.8e-201 704.9 429 81.6
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.6e-196 689.5 399 85.2
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 7.4e-181 637.5 404 77.2
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 4.8e-180 634.8 393 77.6
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 1.1e-179 633.6 416 75.2
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 2.2e-177 625.9 404 75.7
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 2.9e-177 625.5 435 72.0
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 6.5e-177 624.4 433 73.4
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.7e-174 614.4 439 71.1
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 5.7e-173 611.3 428 70.3
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 9.7e-173 610.5 413 72.6
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.2e-170 603.6 415 72.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 2.0e-170 602.8 438 68.9
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 5.0e-169 598.2 411 71.3
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 8.5e-169 597.4 413 71.4
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 1.1e-168 597.0 435 69.0
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-168 597.0 435 69.0
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 1.2e-167 593.6 447 68.2
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 1.6e-167 593.2 439 68.3
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 2.7e-167 592.4 423 70.9
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.6e-167 592.0 435 68.7
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.6e-167 592.0 435 68.7
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 6.1e-167 591.3 413 71.4
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 1.0e-166 590.5 439 68.1
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 1.0e-166 590.5 391 73.9
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 1.4e-166 590.1 413 71.2
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 2.3e-166 589.3 416 70.2
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 4.0e-166 588.6 376 76.9
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 4.0e-166 588.6 435 67.1
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.2e-165 587.0 410 71.5
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 2.0e-165 586.3 414 71.0
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 2.0e-165 586.3 413 70.7
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-165 585.9 429 69.9
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 7.5e-165 584.3 429 69.7
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.2e-164 582.8 429 69.2
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 2.2e-164 582.8 412 70.6
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.8e-164 582.4 413 70.5
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 3.7e-164 582.0 431 67.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 4.8e-164 581.6 391 72.1
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 1.1e-163 580.5 413 71.2
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.4e-163 579.3 416 68.3
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 3.1e-163 578.9 405 69.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 4.1e-163 578.6 414 70.3
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 5.3e-163 578.2 433 66.7
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 9.1e-163 577.4 411 69.6
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 2.0e-162 576.2 405 70.4
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.7e-162 575.9 415 68.9
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 2.7e-162 575.9 395 71.6
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 4.5e-162 575.1 434 67.5
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.3e-161 573.5 411 69.1
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.2e-161 572.8 389 73.0
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 3.8e-161 572.0 408 70.1
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 8.5e-161 570.9 425 68.7
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.5e-160 568.2 411 68.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.4e-160 567.4 408 68.4
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 1.2e-159 567.0 392 72.4
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 1.2e-159 567.0 410 68.5
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 3.6e-159 565.5 410 69.0
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 3.6e-159 565.5 427 66.3
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 3.6e-159 565.5 403 68.0
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 8.0e-159 564.3 395 71.1
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 3.0e-158 562.4 410 67.6
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 5.2e-158 561.6 391 69.1
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 8.8e-158 560.8 435 66.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 2.0e-157 559.7 403 68.2
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 2.0e-157 559.7 403 68.2
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 3.4e-157 558.9 404 68.6
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 4.4e-157 558.5 412 67.2
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 5.7e-157 558.1 404 67.6
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 5.7e-157 558.1 391 69.8
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 6.3e-156 554.7 392 67.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 1.1e-155 553.9 385 70.6
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 2.4e-155 552.7 419 66.3
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 9.1e-155 550.8 393 68.2
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 1.2e-154 550.4 409 66.7
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 4.5e-154 548.5 394 68.0
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 5.9e-154 548.1 403 67.5
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.0e-153 547.4 390 68.5
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.0e-153 547.4 390 68.5
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 1.0e-153 547.4 407 68.3
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 2.9e-153 545.8 437 63.6
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 3.8e-153 545.4 394 70.8
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 3.8e-153 545.4 395 69.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 5.0e-153 545.0 410 65.6
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 6.6e-153 544.7 394 67.5
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.5e-152 543.5 421 66.3
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.3e-152 542.3 397 67.5
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 4.2e-152 542.0 412 67.7
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.2e-151 540.4 432 63.0
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 1.6e-151 540.0 429 62.9
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.8e-150 536.6 376 72.1
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.3e-150 536.2 438 61.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 4.0e-150 535.4 436 63.1
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 4.1e-147 525.4 434 62.4
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 8.6e-145 517.7 405 64.0
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 1.9e-144 516.5 419 64.4
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 7.3e-144 514.6 412 63.3
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 1.2e-143 513.8 383 67.1
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 6.1e-143 511.5 435 61.6
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-142 510.0 464 59.9
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 2.2e-140 503.1 431 58.9
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.2e-140 503.1 333 72.1
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 1.1e-139 500.7 334 74.9
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.9e-139 500.0 417 62.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 9.2e-139 497.7 410 61.7
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 6.0e-138 495.0 443 57.6
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 7.8e-138 494.6 383 63.7
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 4.3e-136 488.8 381 64.0
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 7.3e-136 488.0 424 59.0
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 6.2e-135 485.0 411 60.6
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 1.4e-134 483.8 382 62.3
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 2.3e-134 483.0 390 61.3
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 3.1e-134 482.6 313 75.1
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 8.9e-134 481.1 391 62.4
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.2e-133 480.7 403 61.3
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 1.2e-133 480.7 403 61.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 2.9e-132 476.1 418 59.1
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 1.1e-131 474.2 390 62.3
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 2.4e-131 473.0 405 61.5
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.7e-130 469.5 390 61.5
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-126 457.6 383 60.6
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 5.2e-126 455.3 416 58.4
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 3.1e-118 429.5 263 77.6
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.9e-117 424.5 390 54.9
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 7.8e-114 414.8 276 71.4
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.1e-103 378.3 250 71.2
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 8.1e-103 378.3 246 72.0
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.3e-97 360.1 281 63.3
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 4.8e-95 352.4 395 48.4
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.0e-93 347.1 419 45.6
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 2.5e-88 330.1 286 58.0
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.3e-88 329.7 391 45.8
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 8.2e-87 325.1 274 55.5
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 1.1e-86 324.7 234 67.1
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.2e-85 321.2 255 60.4
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.2e-74 284.6 172 79.7
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.7e-71 273.1 197 70.6
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 1.4e-62 244.6 176 67.0
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.5e-59 234.6 298 41.6
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 5.9e-53 212.6 201 54.7
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.2e-51 206.8 175 61.7
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 3.0e-49 200.3 210 53.8
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.9e-43 181.0 169 57.4
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 3.0e-41 173.7 118 74.6
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 9.8e-40 168.7 146 58.2
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.4e-38 164.9 227 39.6
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 1.4e-33 148.3 460 27.2
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 5.7e-32 142.9 156 48.1
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 4.1e-30 136.7 82 72.0
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 9.2e-30 135.6 250 36.0
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 3.9e-28 130.2 236 37.7
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 2.1e-26 124.4 73 78.1
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 2.6e-24 117.5 240 33.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 9.8e-24 115.5 249 34.1
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.7e-23 114.8 390 27.9
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 3.5e-21 107.1 63 71.4
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.8e-21 105.9 63 71.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.7e-20 104.8 63 69.8
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 2.1e-18 97.8 185 35.1
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 2.0e-16 91.3 146 38.4
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 3.7e-15 87.0 153 34.0
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.1e-13 81.3 224 29.5
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 2.3e-09 67.8 67 44.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.9e-09 65.9 119 37.0
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.5e-08 65.1 38 71.1
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 8.4e-07 59.3 93 37.6
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.4e-06 58.5 93 36.6
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 1.4e-06 58.5 95 38.9
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.9e-06 58.2 99 35.4
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 1.9e-06 58.2 93 36.6
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 2.4e-06 57.8 93 35.5
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 2.4e-06 57.8 95 37.9
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 3.2e-06 57.4 102 34.3
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 5.4e-06 56.6 136 30.9
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 5.4e-06 56.6 95 36.8
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 7.1e-06 56.2 136 31.6
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 9.2e-06 55.8 136 31.6
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 9.2e-06 55.8 136 31.6
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 9.2e-06 55.8 136 30.9
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 9.2e-06 55.8 112 33.0


User provided reference genes

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