Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 4.0e-104 381.3 180 100.0
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.6e-87 325.5 172 89.0
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 3.2e-85 318.5 157 93.6
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.6e-84 316.2 158 92.4
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.3e-78 296.6 154 89.0
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 4.9e-78 294.7 172 77.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 6.0e-76 287.7 159 82.4
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 1.3e-75 286.6 159 79.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.0e-75 285.4 181 75.7
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.1e-74 283.5 159 81.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.9e-74 282.7 159 81.8
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 9.6e-74 280.4 157 78.3
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-73 279.6 155 78.1
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.8e-73 278.9 154 78.6
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 4.8e-73 278.1 164 75.0
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-72 276.9 159 78.0
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.1e-72 276.9 159 78.0
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.8e-72 276.2 151 79.5
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 2.4e-72 275.8 157 77.7
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.2e-71 273.5 159 76.7
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 1.5e-71 273.1 151 80.8
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 2.6e-71 272.3 152 78.3
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 7.6e-71 270.8 151 78.8
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.0e-70 270.4 151 77.5
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.7e-70 269.6 155 76.1
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 2.2e-70 269.2 152 76.3
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.9e-70 268.9 149 81.2
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 3.8e-70 268.5 157 73.9
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 5.0e-70 268.1 149 77.2
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 5.0e-70 268.1 149 77.9
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 5.0e-70 268.1 159 74.2
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 6.5e-70 267.7 157 75.2
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 6.5e-70 267.7 157 76.4
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 8.5e-70 267.3 155 78.1
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.5e-70 267.3 151 79.5
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 8.5e-70 267.3 151 79.5
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-69 266.9 151 76.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 1.9e-69 266.2 155 77.4
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.9e-69 266.2 160 76.9
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.9e-69 266.2 160 76.9
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.9e-69 266.2 149 77.2
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 2.5e-69 265.8 152 74.3
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.2e-69 265.4 152 75.0
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 4.2e-69 265.0 152 77.6
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.2e-69 265.0 159 74.2
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 5.5e-69 264.6 155 75.5
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 5.5e-69 264.6 152 78.3
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 7.2e-69 264.2 151 76.2
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 7.2e-69 264.2 152 77.6
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 7.2e-69 264.2 155 77.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 7.2e-69 264.2 150 76.0
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 9.3e-69 263.8 159 74.8
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.3e-69 263.8 149 76.5
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 9.3e-69 263.8 149 76.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 9.3e-69 263.8 152 75.0
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.6e-68 263.1 152 75.7
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.6e-68 263.1 149 76.5
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.6e-68 263.1 149 76.5
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.1e-68 262.7 157 77.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.7e-68 262.3 151 74.8
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.7e-68 262.3 151 72.8
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 3.6e-68 261.9 151 72.2
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 3.6e-68 261.9 152 77.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.6e-68 261.5 147 79.6
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.6e-68 261.5 151 75.5
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 6.1e-68 261.2 147 79.6
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.1e-68 261.2 151 74.8
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 7.9e-68 260.8 152 76.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.0e-67 260.4 157 72.6
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-67 260.0 147 78.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-67 260.0 147 78.9
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.8e-67 259.6 157 71.3
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.3e-67 259.2 149 74.5
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 3.0e-67 258.8 151 73.5
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 6.7e-67 257.7 146 74.7
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.7e-67 257.7 147 74.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 6.7e-67 257.7 149 75.2
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.5e-66 256.5 149 73.2
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.5e-66 256.5 154 72.1
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.9e-66 256.1 149 73.8
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.5e-66 255.8 153 73.2
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 4.3e-66 255.0 149 73.2
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 4.3e-66 255.0 149 73.2
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-65 253.4 157 67.5
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.2e-65 252.7 149 73.2
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 2.8e-65 252.3 151 72.2
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.8e-65 252.3 157 72.0
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 3.7e-65 251.9 149 73.2
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 6.3e-65 251.1 149 71.1
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 6.3e-65 251.1 149 72.5
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 8.2e-65 250.8 147 74.1
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 1.4e-64 250.0 149 71.8
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.4e-64 250.0 157 66.9
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.8e-64 249.6 152 70.4
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.4e-64 249.2 147 76.2
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.4e-64 249.2 147 76.2
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.4e-64 249.2 150 70.7
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.1e-64 248.8 159 71.1
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 6.9e-64 247.7 149 71.8
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-63 246.5 149 71.1
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-63 246.5 149 71.1
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 5.9e-63 244.6 154 72.1
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.7e-60 235.7 213 58.2
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-59 232.6 135 74.8
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.5e-58 229.9 135 74.1
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 2.6e-58 229.2 133 75.9
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-58 228.8 191 56.0
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-58 228.8 191 56.0
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 5.7e-58 228.0 149 65.8
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.2e-57 226.1 149 66.4
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 6.9e-56 221.1 125 77.6
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.5e-55 218.4 151 63.6
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 4.5e-55 218.4 151 63.6
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 5.9e-55 218.0 157 62.4
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.8e-54 215.3 147 63.9
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 4.2e-53 211.8 151 68.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.3e-50 202.2 172 55.2
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 3.5e-47 192.2 117 69.2
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.5e-45 186.8 151 51.7
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 2.7e-44 182.6 109 71.6
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.6e-44 182.2 111 80.2
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 8.0e-44 181.0 152 59.2
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.0e-43 179.1 137 59.9
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-38 163.7 91 74.7
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.1e-37 160.6 152 50.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.9e-37 159.8 114 57.9
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 4.7e-36 155.2 163 47.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-34 150.2 145 42.1
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.5e-34 150.2 145 42.1
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.4e-34 149.1 169 43.2
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 9.8e-34 147.5 180 40.0
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 5.4e-32 141.7 142 44.4
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.0e-30 137.5 93 62.4
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.1e-29 134.0 150 40.7
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 3.2e-29 132.5 141 43.3
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.8e-28 129.4 93 59.1
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 8.0e-28 127.9 65 78.5
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 3.4e-26 122.5 90 61.1
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-23 114.0 95 52.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-23 112.5 59 76.3
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.6e-22 107.8 134 40.3
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-19 100.5 118 44.9
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 4.3e-13 79.0 72 51.4
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 1.8e-11 73.6 49 65.3
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 6.6e-06 55.1 46 58.7
Medtr4g125350 Medicago truncatula HOM05D001119 ORTHO05D000862 8.6e-06 54.7 41 68.3


User provided reference genes

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