Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.6e-141 505.4 253 100.0
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.2e-122 443.4 253 87.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.6e-122 443.0 253 87.4
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.2e-116 422.5 253 83.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.0e-113 413.7 264 80.3
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.8e-113 412.9 253 82.2
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.2e-101 373.6 348 60.1
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 3.0e-97 359.0 253 69.6
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 8.7e-97 357.5 248 71.4
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 1.1e-96 357.1 253 70.4
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.1e-96 357.1 253 70.4
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.5e-96 355.9 253 68.8
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 9.7e-96 354.0 248 70.6
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.1e-94 348.6 258 67.8
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 2.0e-93 346.3 244 70.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 3.4e-93 345.5 202 81.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 7.6e-93 344.4 254 67.3
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.7e-92 343.2 253 68.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 2.9e-92 342.4 241 70.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 3.8e-92 342.0 248 67.3
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 5.0e-92 341.7 245 68.2
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 5.0e-92 341.7 255 65.9
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.5e-91 339.3 256 67.2
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.5e-91 339.3 253 68.0
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 3.2e-91 339.0 210 75.7
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 3.2e-91 339.0 253 66.8
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 3.2e-91 339.0 202 79.2
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 5.5e-91 338.2 260 66.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 7.2e-91 337.8 246 67.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 9.3e-91 337.4 255 67.5
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-90 337.0 253 66.0
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.2e-90 337.0 208 76.9
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.6e-90 336.7 210 75.7
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.1e-90 336.3 232 69.4
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 3.6e-90 335.5 247 67.6
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 4.6e-90 335.1 247 66.4
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 7.9e-90 334.3 202 77.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.3e-89 332.8 202 76.7
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 217 71.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.9e-89 332.0 208 74.5
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 3.9e-89 332.0 250 66.0
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 5.1e-89 331.6 246 65.4
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 5.1e-89 331.6 248 65.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 5.1e-89 331.6 253 66.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 6.7e-89 331.3 226 68.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.7e-89 331.3 205 76.6
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 8.7e-89 330.9 222 71.2
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.1e-88 330.5 245 66.9
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 245 66.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.5e-88 330.1 248 67.7
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 1.5e-88 330.1 254 66.5
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.9e-88 329.7 222 71.2
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-88 329.7 204 75.0
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.9e-88 329.7 223 70.4
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.5e-88 329.3 247 68.0
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.5e-88 329.3 204 75.0
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.3e-88 328.9 246 65.9
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.3e-88 328.9 248 67.7
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.3e-88 328.9 205 76.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 3.3e-88 328.9 250 68.4
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 4.3e-88 328.6 217 71.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 4.3e-88 328.6 248 65.3
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.3e-88 328.6 231 68.4
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 5.7e-88 328.2 204 74.5
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 5.7e-88 328.2 204 74.5
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 7.4e-88 327.8 202 76.2
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 7.4e-88 327.8 253 66.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 9.7e-88 327.4 202 77.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.3e-87 327.0 203 75.9
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.3e-87 327.0 226 68.6
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.3e-87 327.0 229 69.0
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.3e-87 327.0 204 75.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.3e-87 327.0 204 75.5
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 1.6e-87 326.6 245 64.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 245 64.5
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 245 64.5
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 2.2e-87 326.2 247 66.0
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 2.8e-87 325.9 245 66.1
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 2.8e-87 325.9 245 66.1
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.8e-87 325.9 216 71.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 8.2e-87 324.3 253 65.2
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 8.2e-87 324.3 259 65.3
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 8.2e-87 324.3 239 69.0
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.1e-86 323.9 231 69.3
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 253 65.2
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 1.8e-86 323.2 255 63.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 4.1e-86 322.0 252 62.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 5.3e-86 321.6 233 66.5
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.5e-85 320.1 249 64.3
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.3e-84 317.0 200 73.5
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.3e-84 317.0 242 66.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.3e-84 317.0 202 72.3
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.7e-84 316.6 203 72.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 6.5e-84 314.7 252 62.7
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 6.5e-84 314.7 233 64.4
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.9e-83 313.2 203 71.9
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 5.5e-83 311.6 257 59.9
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 9.4e-83 310.8 257 60.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.2e-82 310.5 267 61.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 6.1e-82 308.1 193 75.1
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 3.0e-81 305.8 151 100.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.7e-79 300.1 258 58.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 4.8e-79 298.5 248 62.9
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 2.4e-78 296.2 248 58.9
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.9e-76 289.3 172 77.9
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 7.2e-75 284.6 214 64.5
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.7e-74 282.7 248 61.3
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.2e-69 267.3 204 65.7
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 4.7e-66 255.4 148 80.4
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.3e-63 247.3 319 45.8
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 8.2e-63 244.6 219 59.4
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.2e-60 236.5 136 80.9
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.2e-59 232.3 280 47.1
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.8e-57 224.9 204 52.5
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.1e-54 217.6 146 70.5
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.4e-54 217.2 195 52.3
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.1e-54 215.7 210 54.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 5.4e-54 215.3 236 47.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.5e-51 206.5 119 81.5
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 2.2e-47 193.4 190 46.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-46 189.9 154 60.4
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 8.6e-44 181.4 106 81.1
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-43 179.9 169 55.0
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 5.2e-41 172.2 194 45.9
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.0e-40 170.2 99 80.8
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.0e-40 170.2 99 78.8
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 9.2e-38 161.4 97 80.4
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-37 161.0 99 76.8
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 2.0e-37 160.2 112 66.1
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 4.4e-32 142.5 116 62.1
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 5.8e-32 142.1 87 77.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.1e-27 127.9 84 67.9
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 8.1e-26 121.7 183 41.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 6.8e-25 118.6 101 54.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.5e-24 117.5 184 35.9
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.9e-23 113.2 69 75.4
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.9e-23 113.2 92 62.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 4.9e-23 112.5 89 62.9
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.4e-22 110.9 69 73.9
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.4e-22 110.9 69 73.9
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.4e-22 110.9 122 46.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.9e-22 110.5 88 62.5
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 3.5e-21 106.3 102 56.9
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.0e-16 90.5 177 31.1
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 1.6e-13 80.9 105 43.8
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 3.0e-12 76.6 51 72.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 3.0e-12 76.6 51 72.5
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.1e-11 74.7 48 70.8
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 7.3e-11 72.0 121 38.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 7.3e-11 72.0 42 83.3
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 4.7e-10 69.3 51 62.7
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 6.9e-09 65.5 55 58.2
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.5e-08 64.3 47 63.8
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.5e-08 64.3 56 55.4
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.5e-08 64.3 62 48.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 2.0e-08 63.9 42 69.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 4.4e-08 62.8 45 62.2
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 7.6e-08 62.0 40 67.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.7e-07 60.8 54 51.9


User provided reference genes

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