Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.8e-132 476.1 493 100.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.5e-85 321.2 321 80.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.3e-72 276.9 325 56.6
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 1.3e-71 275.0 164 87.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.7e-71 273.5 328 64.3
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.8e-70 271.2 164 87.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.2e-68 264.2 301 71.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.0e-60 238.8 170 78.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 7.8e-53 212.6 174 67.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.6e-52 209.1 174 67.2
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.1e-51 208.8 159 73.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.3e-51 207.2 164 65.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-51 207.2 170 68.8
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.8e-48 196.4 163 68.7
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.7e-47 194.9 160 68.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.2e-47 194.5 143 73.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 2.9e-47 194.1 157 70.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 4.1e-46 190.3 172 64.0
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 5.4e-46 189.9 147 71.4
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.4e-46 189.9 147 72.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 9.2e-46 189.1 158 67.7
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.7e-45 187.6 148 70.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.7e-45 187.6 144 71.5
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.7e-45 187.6 142 70.4
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.7e-45 187.6 142 70.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 3.5e-45 187.2 174 62.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 4.6e-45 186.8 170 61.8
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.0e-44 185.7 175 62.3
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.3e-44 185.3 160 65.0
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.3e-44 185.3 147 70.7
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.7e-44 184.9 151 67.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.7e-44 184.9 151 67.5
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.7e-44 184.9 159 66.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 2.3e-44 184.5 156 67.3
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.9e-44 183.7 177 61.6
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.9e-44 183.7 177 61.6
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.9e-44 183.7 141 70.2
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.0e-44 183.3 151 66.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.0e-44 183.3 151 66.9
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 5.0e-44 183.3 147 68.7
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 6.6e-44 183.0 157 63.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.6e-44 183.0 151 66.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 8.6e-44 182.6 147 71.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.6e-44 182.6 159 65.4
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.6e-44 182.6 147 70.1
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.1e-43 182.2 147 70.1
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.9e-43 181.4 174 58.0
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 5.6e-43 179.9 174 62.6
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.6e-43 179.9 145 68.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 9.5e-43 179.1 160 61.2
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.8e-42 177.6 147 67.3
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.8e-42 177.6 176 63.1
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.6e-42 177.2 170 61.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 3.6e-42 177.2 162 61.7
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 4.7e-42 176.8 168 59.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 4.7e-42 176.8 165 60.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 4.7e-42 176.8 169 58.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 4.7e-42 176.8 159 60.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.7e-42 176.8 150 65.3
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.7e-42 176.8 155 63.9
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 8.0e-42 176.0 166 60.2
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.1e-41 175.6 168 58.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-41 175.6 152 65.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.1e-41 175.6 152 65.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.1e-41 175.6 170 57.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.4e-41 175.3 152 64.5
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-41 174.9 173 58.4
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.1e-41 174.1 161 62.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 3.1e-41 174.1 152 64.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 6.8e-41 172.9 147 63.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-40 172.2 110 80.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.5e-40 171.8 140 66.4
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.5e-40 171.8 140 66.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.5e-40 171.8 140 66.4
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.5e-40 171.8 167 58.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.6e-40 171.0 148 61.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.4e-40 170.2 157 60.5
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 7.5e-40 169.5 150 64.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 9.8e-40 169.1 150 64.0
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.8e-40 169.1 152 63.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-39 168.7 173 56.6
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.7e-39 168.3 153 63.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.7e-39 168.3 114 72.8
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-39 167.9 141 63.8
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 2.2e-39 167.9 141 63.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.2e-39 167.9 174 60.3
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.7e-39 167.2 152 63.8
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.7e-39 167.2 146 61.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 4.9e-39 166.8 167 57.5
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 8.3e-39 166.0 147 63.9
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.4e-38 165.2 127 68.5
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.2e-38 164.1 144 63.2
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 7.0e-38 162.9 107 75.7
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 7.0e-38 162.9 144 62.5
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.7e-37 161.0 176 53.4
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 4.6e-37 160.2 107 74.8
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 4.6e-37 160.2 113 73.5
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-37 159.8 107 74.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 7.8e-37 159.5 170 55.9
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.3e-36 158.7 144 60.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 2.3e-36 157.9 107 73.8
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 3.0e-36 157.5 175 50.9
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.1e-35 155.6 102 77.5
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.5e-35 155.2 109 74.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.3e-35 154.1 174 55.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.3e-35 154.1 131 67.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 7.3e-35 152.9 143 58.7
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.1e-33 147.5 175 50.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-32 145.6 139 57.6
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.6e-32 144.4 142 54.9
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.4e-30 137.9 156 53.8
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 7.1e-30 136.3 109 68.8
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.7e-29 134.4 92 71.7
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.0e-28 131.0 160 48.8
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 3.9e-28 130.6 94 70.2
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 6.6e-28 129.8 165 50.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-27 128.3 132 59.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.3e-27 126.3 146 53.4
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 7.3e-27 126.3 146 53.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.2e-26 125.6 163 49.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.2e-26 125.6 107 62.6
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.6e-26 125.2 82 75.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.8e-26 124.4 182 44.5
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.1e-25 120.9 125 59.2
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.0e-25 120.6 111 61.3
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.2e-25 120.2 102 59.8
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.0e-24 118.2 141 55.3
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.4e-24 117.5 109 61.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 7.6e-24 116.3 108 55.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.3e-23 115.5 109 60.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.3e-23 115.5 120 59.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.4e-22 112.1 109 56.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.6e-21 108.6 103 56.3
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.6e-21 108.6 109 54.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.7e-21 107.8 108 54.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 4.6e-21 107.1 105 55.2
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.6e-21 107.1 104 54.8
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 7.8e-21 106.3 108 53.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 7.8e-21 106.3 109 53.2
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-20 105.9 101 59.4
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.6e-20 103.2 102 55.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.9e-19 101.7 108 51.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.3e-19 99.8 102 53.9
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.2e-18 96.7 94 58.5
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-17 95.1 101 51.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 9.0e-17 92.8 107 50.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.9e-15 87.8 110 45.5
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.8e-15 87.4 101 53.5
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.8e-15 87.4 104 46.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 3.8e-15 87.4 148 39.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 2.1e-13 81.6 54 74.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.7e-13 81.3 109 42.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 7.8e-13 79.7 108 44.4
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.0e-12 77.8 68 60.3
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 6.6e-12 76.6 49 79.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 8.7e-12 76.3 146 31.5
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-11 75.9 53 69.8
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.6e-11 73.6 92 48.9
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.8e-10 71.2 142 37.3
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-09 68.6 76 52.6
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 5.3e-09 67.0 66 57.6
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 3.4e-08 64.3 65 52.3
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.9e-06 58.5 62 54.8
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 7.1e-06 56.6 50 58.0


User provided reference genes

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