Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.2e-35 151.8 78 100.0
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 7.7e-20 100.1 76 72.4
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-18 95.9 51 90.2
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.3e-18 94.7 173 39.3
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 8.0e-17 90.1 51 82.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 8.0e-17 90.1 51 82.4
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 3.0e-16 88.2 50 86.0
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.0e-16 88.2 51 80.4
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.0e-16 88.2 51 80.4
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 6.8e-16 87.0 51 78.4
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 5.4e-13 77.4 51 70.6
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.7e-12 75.1 49 65.3
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 4.6e-12 74.3 49 65.3
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 5.9e-12 73.9 47 70.2
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.9e-12 73.9 47 70.2
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.9e-12 73.9 47 70.2
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.9e-12 73.9 47 70.2
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 5.9e-12 73.9 47 70.2
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 7.8e-12 73.6 51 64.7
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 1.0e-11 73.2 48 72.9
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 1.3e-11 72.8 51 68.6
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 1.3e-11 72.8 50 64.0
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.3e-11 72.8 50 64.0
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 1.7e-11 72.4 51 64.7
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.3e-11 72.0 51 60.8
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 2.9e-11 71.6 51 62.7
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.9e-11 71.6 49 63.3
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 3.9e-11 71.2 49 67.3
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 3.9e-11 71.2 49 67.3
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 5.0e-11 70.9 49 61.2
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 5.0e-11 70.9 49 63.3
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 5.0e-11 70.9 51 58.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.0e-11 70.9 47 68.1
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 6.6e-11 70.5 51 58.8
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 6.6e-11 70.5 49 59.2
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 8.6e-11 70.1 49 67.3
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 8.6e-11 70.1 49 61.2
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 8.6e-11 70.1 51 60.8
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.1e-10 69.7 51 56.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.1e-10 69.7 49 59.2
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 1.5e-10 69.3 51 56.9
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.5e-10 69.3 51 62.7
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.9e-10 68.9 51 54.9
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-10 68.9 51 54.9
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.9e-10 68.9 51 54.9
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.9e-10 68.9 51 54.9
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 1.9e-10 68.9 49 65.3
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.9e-10 68.9 51 56.9
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.5e-10 68.6 49 59.2
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 2.5e-10 68.6 49 59.2
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 3.3e-10 68.2 51 54.9
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 3.3e-10 68.2 51 64.7
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 5.6e-10 67.4 51 60.8
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 7.3e-10 67.0 49 57.1
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 9.5e-10 66.6 49 59.2
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 9.5e-10 66.6 48 62.5
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.2e-09 66.2 45 62.2
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 1.2e-09 66.2 51 54.9
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.2e-09 66.2 51 52.9
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.6e-09 65.9 51 54.9
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.6e-09 65.9 51 58.8
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 2.1e-09 65.5 45 60.0
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 2.8e-09 65.1 48 62.5
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.8e-09 65.1 47 57.4
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.6e-09 64.7 45 62.2
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 3.6e-09 64.7 45 62.2
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 3.6e-09 64.7 45 62.2
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 4.7e-09 64.3 49 61.2
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 6.2e-09 63.9 51 52.9
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 6.2e-09 63.9 49 57.1
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 6.2e-09 63.9 44 68.2
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 6.2e-09 63.9 51 54.9
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 8.0e-09 63.5 45 64.4
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 8.0e-09 63.5 50 54.0
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 8.0e-09 63.5 51 56.9
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 8.0e-09 63.5 49 55.1
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.0e-08 63.2 45 66.7
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 1.4e-08 62.8 48 62.5
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.4e-08 62.8 48 60.4
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 1.4e-08 62.8 48 56.2
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 1.4e-08 62.8 48 56.2
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.8e-08 62.4 49 59.2
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 2.3e-08 62.0 48 60.4
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 2.3e-08 62.0 51 54.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 3.1e-08 61.6 49 53.1
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.0e-08 61.2 49 55.1
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 4.0e-08 61.2 48 60.4
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 5.2e-08 60.8 49 55.1
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 5.2e-08 60.8 45 62.2
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 5.2e-08 60.8 45 62.2
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 5.2e-08 60.8 47 59.6
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 6.8e-08 60.5 48 56.2
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 6.8e-08 60.5 45 62.2
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 8.9e-08 60.1 45 57.8
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 8.9e-08 60.1 49 55.1
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.4e-07 58.2 51 52.9
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 3.4e-07 58.2 47 51.1
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 7.5e-07 57.0 43 58.1
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.7e-06 55.8 51 49.0
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.9e-06 55.1 45 55.6
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 3.7e-06 54.7 41 53.7
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 4.9e-06 54.3 33 72.7


User provided reference genes

Program Settings