Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 1.1e-148 530.4 358 100.0
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 2.4e-100 369.8 358 72.3
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 2.0e-99 366.7 358 67.0
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 5.8e-86 322.0 358 56.7
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.2e-83 314.3 361 56.0
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.6e-75 287.3 359 67.1
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 3.9e-74 282.7 358 65.4
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 7.3e-73 278.5 360 60.8
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 3.6e-72 276.2 360 62.2
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 4.7e-72 275.8 365 58.9
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 3.1e-71 273.1 358 64.8
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 8.9e-71 271.6 367 63.5
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 2.6e-70 270.0 365 67.4
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 5.8e-70 268.9 359 58.5
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 5.8e-70 268.9 357 60.2
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 2.2e-69 266.9 360 65.8
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 2.9e-69 266.5 358 60.9
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 3.7e-69 266.2 358 65.9
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 4.9e-69 265.8 356 48.6
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.2e-67 261.2 366 47.5
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 7.8e-67 258.5 384 63.3
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.3e-66 257.7 360 52.2
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.7e-66 257.3 373 63.0
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.7e-66 257.3 361 62.9
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 3.3e-65 253.1 373 57.4
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 4.3e-65 252.7 358 58.4
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 5.6e-65 252.3 360 58.3
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 7.3e-65 251.9 366 62.8
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 2.8e-64 250.0 365 61.1
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 2.8e-64 250.0 356 55.3
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 1.4e-63 247.7 364 62.6
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.4e-63 246.9 369 60.2
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 3.1e-63 246.5 369 61.0
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 3.1e-63 246.5 359 58.5
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 3.1e-63 246.5 359 54.0
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 5.2e-63 245.7 364 61.8
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 8.9e-63 245.0 359 52.4
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 8.9e-63 245.0 358 61.2
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 1.2e-62 244.6 365 59.5
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 9.9e-62 241.5 367 59.4
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.3e-61 241.1 369 62.9
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 1.3e-61 241.1 372 60.8
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.9e-61 240.0 368 62.5
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.9e-60 237.3 364 63.5
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.9e-60 237.3 360 58.9
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 4.2e-60 236.1 358 60.3
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 4.2e-60 236.1 358 60.3
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 9.2e-60 235.0 375 62.4
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 2.1e-59 233.8 370 58.9
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 4.6e-59 232.6 368 57.6
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 6.0e-59 232.3 364 59.9
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 1.7e-58 230.7 364 50.8
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 1.7e-58 230.7 366 61.7
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 3.9e-58 229.6 359 52.9
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 6.6e-58 228.8 377 49.3
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 1.1e-57 228.0 378 61.6
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 1.1e-57 228.0 367 51.8
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 1.1e-57 228.0 367 51.8
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 1.5e-57 227.6 361 57.9
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 1.9e-57 227.3 357 59.9
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 2.5e-57 226.9 379 59.4
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 1.6e-56 224.2 371 56.3
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 3.6e-56 223.0 376 61.7
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 4.7e-56 222.6 360 52.2
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 6.2e-56 222.2 362 53.9
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 6.2e-56 222.2 357 57.1
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 2.4e-55 220.3 376 56.6
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 5.2e-55 219.2 360 57.2
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 5.8e-54 215.7 369 55.8
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 5.8e-54 215.7 369 55.0
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 1.3e-53 214.5 374 60.2
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 1.7e-53 214.2 387 58.4
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 4.9e-53 212.6 367 42.2
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 8.4e-53 211.8 373 55.8
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 9.3e-52 208.4 368 51.4
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 1.6e-51 207.6 379 57.3
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.6e-51 207.6 359 51.5
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 2.1e-51 207.2 404 49.5
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 2.1e-51 207.2 360 58.9
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 4.6e-51 206.1 169 66.3
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 1.0e-50 204.9 361 54.3
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 5.1e-50 202.6 394 54.3
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 1.5e-49 201.1 360 51.9
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 8.1e-48 195.3 278 71.2
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 2.6e-46 190.3 358 43.3
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 7.1e-44 182.2 347 57.3
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 5.1e-42 176.0 368 40.2
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.1e-41 174.9 305 55.1
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 9.6e-41 171.8 363 52.1
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 1.3e-40 171.4 396 51.0
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 3.7e-40 169.9 374 46.5
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.0e-39 166.4 161 59.6
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 1.2e-38 164.9 158 58.9
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 4.5e-38 162.9 389 49.9
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 3.5e-35 153.3 195 46.2
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.3e-32 144.8 126 60.3
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 2.8e-32 143.7 93 80.6
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 3.7e-32 143.3 286 58.7
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.4e-31 140.6 259 57.1
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 4.0e-31 139.8 142 56.3
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 2.9e-29 133.7 119 59.7
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 7.1e-28 129.0 116 56.0
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 1.3e-26 124.8 283 49.1
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 7.4e-25 119.0 497 39.4
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 1.6e-24 117.9 192 38.5
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 1.2e-22 111.7 371 37.2
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 2.6e-22 110.5 86 74.4
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 2.9e-21 107.1 144 47.2
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 1.4e-20 104.8 97 54.6
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.1e-19 99.4 79 74.7
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 6.1e-19 99.4 180 39.4
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 1.0e-18 98.6 185 36.2
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 5.1e-18 96.3 93 52.7
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.5e-17 94.0 77 71.4
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 3.3e-17 93.6 97 50.5
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 5.7e-17 92.8 118 53.4
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 8.5e-13 79.0 115 42.6
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 7.2e-12 75.9 101 43.6
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.2e-12 75.9 101 43.6
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-11 74.3 101 42.6
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 6.1e-11 72.8 106 42.5
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-09 68.6 74 50.0
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 1.1e-09 68.6 88 47.7
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 2.0e-09 67.8 101 40.6
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 2.2e-08 64.3 74 47.3
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 8.2e-08 62.4 40 67.5
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 8.2e-08 62.4 72 47.2
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.3e-07 59.7 100 40.0
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 7.0e-07 59.3 101 39.6
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 1.5e-06 58.2 101 38.6
arahy.Tifrunner.gnm1.ann1.8K6P1P Arachis hypogaea HOM05D008215 ORTHO05D004366 1.5e-06 58.2 91 40.7
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 1.5e-06 58.2 101 38.6
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 2.0e-06 57.8 101 38.6
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-06 57.4 101 38.6
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.5e-06 56.6 101 37.6
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 4.5e-06 56.6 101 37.6
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 5.9e-06 56.2 101 36.6
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.7e-06 55.8 101 36.6


User provided reference genes

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