Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 3.8e-221 771.2 384 100.0
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 6.2e-195 684.1 388 89.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 2.6e-193 678.7 388 89.2
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.4e-191 672.2 388 88.7
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 7.8e-182 640.6 386 85.5
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.8e-179 631.3 386 84.2
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 2.1e-158 562.8 376 78.5
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 7.9e-158 560.8 392 71.7
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.8e-157 559.7 319 83.4
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.8e-157 559.7 384 73.4
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.3e-157 559.3 362 75.4
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 3.9e-157 558.5 375 72.8
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.9e-157 558.5 390 72.6
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 6.7e-157 557.8 339 79.1
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 8.7e-157 557.4 376 74.2
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 8.7e-157 557.4 356 76.4
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.5e-156 556.6 382 71.7
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 4.3e-156 555.1 376 72.1
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 5.7e-156 554.7 380 73.9
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 5.7e-156 554.7 384 72.4
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 9.6e-156 553.9 384 70.8
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 9.6e-156 553.9 398 71.4
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.6e-155 553.1 320 81.6
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.1e-155 552.7 365 74.8
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.7e-155 552.0 364 73.9
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.8e-155 551.6 318 81.4
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 6.3e-155 551.2 319 81.5
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 8.2e-155 550.8 388 72.4
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 8.2e-155 550.8 324 80.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-154 550.1 361 74.8
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 2.4e-154 549.3 380 72.1
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 3.1e-154 548.9 376 72.3
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 4.1e-154 548.5 380 71.8
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.3e-154 548.1 389 71.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 1.2e-153 547.0 344 76.5
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.2e-153 547.0 353 75.4
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.5e-153 546.6 380 71.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 2.0e-153 546.2 380 71.8
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.6e-153 545.8 368 73.9
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 3.4e-153 545.4 378 72.5
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 7.6e-153 544.3 384 71.6
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.3e-152 543.5 366 73.5
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 1.3e-152 543.5 319 80.3
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.7e-152 543.1 387 69.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 2.2e-152 542.7 317 80.8
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 3.8e-152 542.0 319 79.3
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 5.0e-152 541.6 389 71.5
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 8.4e-152 540.8 338 76.9
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 8.4e-152 540.8 389 69.4
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.4e-151 540.0 380 70.8
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.4e-151 540.0 358 74.0
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.4e-151 540.0 383 70.0
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 5.5e-151 538.1 354 76.6
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 5.5e-151 538.1 318 78.9
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 7.2e-151 537.7 389 69.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 9.3e-151 537.3 319 79.3
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.2e-150 537.0 319 79.0
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 2.1e-150 536.2 352 73.3
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.1e-150 536.2 319 79.6
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 2.1e-150 536.2 367 72.2
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 3.5e-150 535.4 401 66.6
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 7.9e-150 534.3 316 79.1
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 7.9e-150 534.3 316 79.1
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 7.9e-150 534.3 316 79.1
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.3e-149 533.5 319 78.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 1.8e-149 533.1 316 79.7
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 3.0e-149 532.3 381 70.6
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 5.1e-149 531.6 378 70.6
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 6.7e-149 531.2 319 79.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.1e-148 530.4 362 72.1
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 5.7e-148 528.1 320 77.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.1e-146 523.9 381 70.1
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 9.0e-146 520.8 391 67.0
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 6.5e-144 514.6 319 76.2
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 8.5e-144 514.2 351 72.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 4.2e-143 511.9 344 70.6
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 5.5e-143 511.5 355 71.8
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 9.4e-143 510.8 387 67.2
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 1.6e-142 510.0 353 72.0
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 2.7e-142 509.2 347 69.7
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 3.7e-139 498.8 316 75.3
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 9.1e-138 494.2 372 67.7
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 1.1e-135 487.3 276 83.7
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.1e-134 481.5 316 70.6
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 2.0e-132 476.5 276 81.9
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-130 470.3 343 67.9
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 7.7e-129 464.5 378 65.9
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 2.7e-126 456.1 268 81.0
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 6.7e-125 451.4 267 79.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 3.6e-118 429.1 304 71.7
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.3e-117 426.4 259 78.8
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 3.0e-117 426.0 325 62.2
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 2.0e-113 413.3 325 58.5
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 7.7e-113 411.4 268 70.1
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 5.5e-111 405.2 318 59.7
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 8.0e-110 401.4 379 52.8
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-106 390.2 267 72.3
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 3.5e-105 386.0 272 70.6
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 4.5e-105 385.6 258 72.5
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.1e-102 376.7 290 65.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.4e-101 374.0 287 65.9
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 1.8e-93 347.1 226 72.6
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 9.2e-82 308.1 269 63.6
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.8e-77 293.9 268 60.8
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 6.4e-75 285.4 226 66.4
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.1e-71 274.6 322 42.5
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.1e-71 274.6 322 42.5
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 3.6e-70 269.6 311 44.7
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 8.9e-69 265.0 336 40.5
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.4e-67 258.8 154 78.6
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 1.7e-64 250.8 177 67.8
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 5.3e-61 239.2 166 72.3
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 2.1e-57 227.3 130 81.5
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.3e-38 164.9 417 30.9
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.8e-38 163.7 91 87.9
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-33 146.4 94 69.1
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 1.3e-30 138.3 79 82.3
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 9.1e-29 132.1 90 70.0
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.2e-28 131.7 85 67.1
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 6.9e-21 105.9 105 53.3
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 4.5e-20 103.2 126 45.2
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 5.5e-18 96.3 64 73.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 6.7e-16 89.4 54 75.9
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.5e-15 88.2 74 58.1
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 9.7e-15 85.5 47 87.2
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 8.2e-14 82.4 58 70.7
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.1e-13 82.0 95 51.6
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.1e-13 80.5 51 68.6
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 3.1e-13 80.5 51 68.6
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.5e-12 77.0 298 25.5
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 4.5e-12 76.6 108 50.0
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 2.9e-11 73.9 91 49.5
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 1.1e-10 72.0 155 34.8
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 1.9e-10 71.2 41 82.9
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 9.4e-10 68.9 281 28.5
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 1.6e-09 68.2 42 73.8
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 3.6e-09 67.0 75 49.3
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 8.0e-09 65.9 293 25.9
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.0e-08 65.5 42 76.2
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.8e-08 64.7 286 26.2
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.3e-08 64.3 325 24.3
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 2.3e-08 64.3 276 26.1
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 4.0e-08 63.5 308 24.0
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 6.7e-08 62.8 277 24.9
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 1.2e-07 62.0 281 26.0
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 1.5e-07 61.6 277 24.5
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 2.0e-07 61.2 80 43.8
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 2.0e-07 61.2 277 24.2
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 4.4e-07 60.1 277 24.2
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 4.4e-07 60.1 294 24.8
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.3e-06 58.5 303 24.8
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 3.7e-06 57.0 288 24.7


User provided reference genes

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