Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.3e-140 503.1 261 100.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 7.0e-65 251.5 171 78.4
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.2e-63 246.5 171 76.6
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 2.2e-63 246.5 171 76.0
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.9e-62 243.4 168 78.0
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.7e-61 239.6 168 77.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 4.2e-54 215.7 164 73.2
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 6.2e-29 132.1 173 47.4
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.0e-28 131.3 175 49.1
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.4e-27 126.3 177 48.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 4.4e-27 125.9 157 50.3
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.3e-26 124.4 167 49.7
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.7e-26 124.0 173 47.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-26 124.0 191 44.5
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.9e-26 122.5 179 44.7
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 8.3e-26 121.7 169 48.5
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 8.3e-26 121.7 176 45.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.1e-25 121.3 178 42.1
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.9e-25 120.6 160 46.2
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 4.1e-25 119.4 162 49.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 7.0e-25 118.6 166 47.6
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 7.0e-25 118.6 173 47.4
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-24 117.9 168 46.4
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.6e-24 117.5 158 48.7
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 2.0e-24 117.1 126 56.3
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.7e-24 116.7 171 47.4
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.7e-24 116.7 163 45.4
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.7e-24 116.7 160 46.2
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.7e-24 116.7 176 48.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.7e-24 116.7 174 47.7
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.5e-24 116.3 152 48.0
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.6e-24 115.9 182 44.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 4.6e-24 115.9 156 47.4
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.6e-24 115.9 169 46.7
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 7.8e-24 115.2 167 44.3
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 7.8e-24 115.2 198 44.9
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 7.8e-24 115.2 170 45.3
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.0e-23 114.8 153 46.4
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.3e-23 113.6 161 44.7
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.0e-23 113.2 160 45.6
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.9e-23 112.8 174 44.8
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.0e-23 112.5 155 43.2
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 5.0e-23 112.5 156 46.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 6.6e-23 112.1 174 45.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 8.6e-23 111.7 161 44.1
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.9e-22 110.5 162 46.3
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.9e-22 110.5 169 43.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.6e-22 109.0 175 44.6
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 9.5e-22 108.2 179 44.7
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 9.5e-22 108.2 174 43.7
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 1.2e-21 107.8 176 44.9
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.2e-21 107.8 160 46.2
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-21 107.5 158 47.5
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.6e-21 107.5 161 45.3
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 2.1e-21 107.1 170 45.3
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.1e-21 107.1 156 46.8
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.7e-21 105.9 179 43.0
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.7e-21 105.9 182 40.7
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 6.2e-21 105.5 173 44.5
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.2e-21 105.5 203 40.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 8.1e-21 105.1 183 42.6
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.4e-20 104.4 156 46.2
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.4e-20 104.4 159 45.9
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 1.8e-20 104.0 163 42.9
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.8e-20 104.0 183 43.7
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.3e-20 103.6 180 43.3
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 6.8e-20 102.1 160 45.6
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.2e-19 101.3 179 42.5
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 2.6e-19 100.1 185 39.5
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 7.5e-19 98.6 134 48.5
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 8.3e-18 95.1 153 42.5
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 8.3e-18 95.1 154 41.6
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.1e-17 94.7 157 43.9
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.4e-17 93.6 196 35.7
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 2.4e-17 93.6 168 41.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.4e-17 93.6 154 40.3
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 4.1e-17 92.8 148 44.6
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.1e-17 92.8 149 43.0
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 5.4e-17 92.4 211 37.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 7.1e-17 92.0 164 40.9
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 7.1e-17 92.0 204 37.7
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.6e-16 90.9 179 38.5
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.6e-16 90.9 208 37.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.7e-16 90.1 170 40.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 3.5e-16 89.7 208 36.1
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.5e-16 89.7 215 36.3
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.5e-16 89.7 154 39.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 6.0e-16 89.0 226 36.3
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.8e-16 88.6 278 31.7
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.0e-15 88.2 147 41.5
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.3e-15 87.8 208 35.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.3e-15 87.8 155 43.2
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.3e-15 87.8 120 47.5
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.1e-15 85.9 127 43.3
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 4.3e-14 82.8 176 36.4
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 4.3e-14 82.8 197 35.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 7.3e-14 82.0 139 39.6
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 7.3e-14 82.0 170 39.4
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.7e-13 79.3 175 36.0
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 4.7e-13 79.3 159 37.1
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.2e-13 79.0 143 37.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 6.2e-13 79.0 130 40.8
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 8.1e-13 78.6 140 40.0
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.4e-12 77.8 159 35.8
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-12 76.6 176 35.8
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 4.0e-12 76.3 170 37.1
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 5.2e-12 75.9 169 33.1
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 5.2e-12 75.9 139 40.3
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 8.9e-12 75.1 199 34.2
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-11 74.7 135 40.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-11 74.3 159 36.5
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 3.4e-11 73.2 160 36.9
CAN.G1328.12 Capsicum annuum HOM05D000225 ORTHO05D001595 4.4e-11 72.8 45 82.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 9.9e-11 71.6 139 33.8
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 9.9e-11 71.6 154 36.4
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 9.9e-11 71.6 96 47.9
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-10 71.2 179 33.5
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.7e-10 70.9 221 33.9
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.7e-10 70.9 159 34.6
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 2.2e-10 70.5 141 34.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 2.2e-10 70.5 141 34.8
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 2.9e-10 70.1 144 36.1
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 3.8e-10 69.7 183 33.9
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.8e-10 69.7 207 31.9
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.8e-10 69.7 111 42.3
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 6.4e-10 68.9 169 34.3
Nitab4.5_0000482g0050 Nicotiana tabacum HOM05D000225 ORTHO05D001595 1.9e-09 67.4 45 77.8
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.9e-09 67.4 184 35.9
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.9e-09 67.4 207 33.3
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.4e-09 67.0 132 37.1
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 3.2e-09 66.6 95 48.4
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 4.1e-09 66.2 203 32.5
PGSC0003DMG402000674 Solanum tuberosum HOM05D000225 ORTHO05D001595 5.4e-09 65.9 45 77.8
Solyc07g049180.3 Solanum lycopersicum HOM05D000225 ORTHO05D001595 1.2e-08 64.7 45 77.8
Sopen07g025160 Solanum pennellii HOM05D000225 ORTHO05D001595 1.6e-08 64.3 45 77.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 2.1e-08 63.9 119 40.3
Nitab4.5_0005321g0020 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.0e-08 62.4 45 75.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.0e-07 61.6 118 43.2
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 3.0e-07 60.1 168 38.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 6.6e-07 58.9 67 47.8
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-06 57.8 169 32.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.5e-06 57.8 96 42.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.5e-06 57.0 53 56.6
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.5e-06 57.0 153 30.1
Peaxi162Scf00921g00021 Petunia axillaris HOM05D000225 ORTHO05D001595 4.3e-06 56.2 42 73.8


User provided reference genes

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