Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 0.0e+00 1482.2 722 100.0
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1289.6 730 86.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 0.0e+00 1280.8 727 86.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 0.0e+00 1279.6 731 85.6
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 0.0e+00 1277.3 727 86.2
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 0.0e+00 1237.6 728 83.4
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 3.9e-283 978.0 708 66.7
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 2.1e-273 945.7 729 63.4
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 1.3e-270 936.4 723 64.0
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 2.2e-270 935.6 725 62.5
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 4.2e-269 931.4 780 60.6
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 1.6e-268 929.5 726 63.5
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 5.6e-266 921.0 685 64.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.2e-265 917.5 705 63.1
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 5.3e-264 914.4 706 62.3
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 2.6e-263 912.1 726 60.9
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.8e-263 911.0 683 64.3
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 1.3e-262 909.8 720 62.9
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.8e-262 908.3 718 62.4
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.8e-262 908.3 718 62.5
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.5e-261 905.6 731 60.9
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 2.7e-260 902.1 716 61.5
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.7e-259 897.5 710 62.7
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 8.7e-259 897.1 671 63.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 9.7e-258 893.6 711 60.8
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.6e-257 892.9 724 60.8
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 3.7e-257 891.7 693 62.0
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 3.1e-256 888.6 693 62.8
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 6.9e-256 887.5 680 62.8
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 4.5e-255 884.8 724 59.3
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 5.9e-255 884.4 715 60.1
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 5.9e-255 884.4 688 61.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.6e-255 884.0 684 63.2
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 1.9e-253 879.4 684 63.0
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 3.2e-253 878.6 709 62.2
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 1.2e-252 876.7 684 62.9
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 6.7e-251 870.9 693 61.2
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.5e-250 869.0 725 61.1
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 7.4e-250 867.5 616 67.0
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 9.7e-250 867.1 726 59.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.8e-249 864.8 717 59.4
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 1.8e-248 862.8 683 62.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.9e-247 857.8 739 58.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.7e-246 856.3 685 60.3
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.2e-246 855.9 715 59.7
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 8.5e-246 854.0 712 58.8
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.1e-245 853.6 658 62.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 1.9e-245 852.8 677 61.4
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 1.9e-245 852.8 698 60.5
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 1.2e-244 850.1 685 60.7
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.6e-244 849.7 749 58.7
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 1.4e-243 846.7 686 59.6
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 5.1e-243 844.7 720 57.8
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 4.4e-242 841.6 715 58.7
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 4.4e-242 841.6 667 61.6
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 5.7e-242 841.3 676 60.8
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 7.4e-242 840.9 683 61.2
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 1.7e-241 839.7 672 60.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 2.2e-241 839.3 593 69.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.2e-241 839.3 711 56.5
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 8.2e-241 837.4 667 61.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 3.1e-240 835.5 682 59.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 4.1e-240 835.1 709 59.4
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 4.1e-240 835.1 725 57.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-239 832.8 675 59.9
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.4e-239 832.0 675 60.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 1.3e-238 830.1 673 60.5
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 2.9e-238 828.9 678 59.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 6.5e-238 827.8 720 57.2
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 5.5e-237 824.7 687 60.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 7.2e-237 824.3 715 58.7
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 2.1e-236 822.8 671 60.1
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 8.0e-236 820.8 683 60.0
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 6.3e-233 811.2 665 58.6
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 5.3e-232 808.1 632 61.7
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 3.8e-230 802.0 678 57.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 1.6e-228 796.6 679 58.3
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.0e-227 792.3 592 64.9
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 2.8e-225 785.8 896 47.4
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 6.3e-225 784.6 695 56.8
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 2.9e-222 775.8 688 54.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.0e-222 775.0 695 56.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.2e-221 772.3 691 55.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 9.4e-221 770.8 618 60.0
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.4e-221 770.8 723 54.5
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.0e-219 767.3 710 56.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.8e-217 759.2 694 52.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 8.3e-217 757.7 692 53.8
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.8e-216 756.5 677 54.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 3.1e-216 755.7 677 53.3
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.4e-216 755.0 735 53.2
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 1.6e-215 753.4 688 53.9
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.7e-215 752.7 686 53.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.5e-213 746.1 731 51.3
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 9.5e-213 744.2 680 53.5
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 4.7e-212 741.9 667 53.7
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.0e-211 740.7 671 57.1
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.0e-211 740.7 694 52.7
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 4.0e-211 738.8 683 53.4
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 5.2e-211 738.4 711 51.2
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 1.2e-210 737.3 691 52.7
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 1.2e-210 737.3 691 52.7
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 9.8e-210 734.2 690 53.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 1.7e-209 733.4 677 52.6
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 3.7e-209 732.3 734 50.3
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 3.7e-209 732.3 691 52.2
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 3.7e-209 732.3 737 50.3
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 4.9e-209 731.9 758 48.9
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 1.6e-207 726.9 677 52.3
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 7.8e-207 724.5 679 52.1
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 7.8e-207 724.5 676 52.4
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.0e-206 724.2 744 48.8
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 3.8e-206 722.2 665 56.1
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 5.6e-205 718.4 736 51.2
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.0e-203 714.1 748 50.4
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 8.9e-203 711.1 697 52.9
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 1.5e-202 710.3 676 54.6
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 3.5e-199 699.1 536 64.6
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 1.2e-196 690.6 651 54.2
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 8.0e-196 688.0 674 53.6
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.8e-195 686.8 681 50.7
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 6.8e-195 684.9 686 51.2
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.4e-192 676.4 681 52.4
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 3.2e-192 676.0 618 53.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 6.6e-190 668.3 713 50.5
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.3e-187 659.8 742 48.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 8.9e-179 631.3 680 47.9
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.0e-178 630.2 532 57.5
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 1.3e-174 617.5 700 47.1
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.4e-171 606.7 562 55.0
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 2.6e-170 603.2 677 47.3
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.3e-158 564.3 327 86.5
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.9e-149 533.9 544 50.0
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.8e-132 476.9 313 68.4
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 3.4e-130 469.9 427 52.2
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 8.5e-121 438.7 391 54.7
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 2.2e-113 414.1 297 64.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 1.5e-112 411.4 402 52.2
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.7e-105 387.9 407 50.4
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.5e-101 374.8 231 76.2
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.5e-101 372.5 406 45.6
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 2.2e-100 370.9 463 42.8
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 2.7e-90 337.4 573 36.3
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 5.0e-89 333.2 212 77.8
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.2e-86 323.2 311 48.6
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.7e-84 318.2 546 36.1
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.2e-84 317.8 580 34.8
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 1.1e-59 235.7 156 68.6
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.9e-57 227.3 213 54.0
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 1.8e-54 218.4 250 47.2
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 4.0e-54 217.2 139 71.2
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.6e-53 214.5 211 51.2
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 2.5e-48 198.0 121 71.1
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-46 191.4 233 44.2
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.1e-43 179.9 129 63.6
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-40 171.4 390 30.5
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 1.7e-36 158.7 189 46.6
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 8.4e-36 156.4 99 69.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 8.4e-36 156.4 99 69.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 8.4e-36 156.4 99 69.7
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 1.6e-31 142.1 281 34.2
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 3.3e-24 117.9 255 30.2
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 9.7e-24 116.3 163 35.6
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 9.7e-24 116.3 253 30.0
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.1e-19 102.8 237 31.6
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 3.6e-18 97.8 147 36.7
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 3.6e-18 97.8 59 72.9
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 8.8e-17 93.2 76 61.8
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.8e-15 87.4 115 40.9
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 68.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-12 79.3 48 68.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.9e-09 67.8 75 49.3
BraA01t04202Z Brassica rapa HOM05D004070 ORTHO05D107995 4.1e-06 57.8 44 59.1


User provided reference genes

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