Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 1.0e-55 219.9 122 100.0
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 5.2e-39 164.5 115 80.9
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 6.0e-35 151.0 115 75.7
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 5.1e-34 147.9 115 74.8
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 2.9e-29 132.1 115 65.2
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 9.3e-28 127.1 112 67.0
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 3.5e-27 125.2 108 67.6
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 7.8e-27 124.0 115 61.7
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 7.8e-27 124.0 115 60.9
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 2.5e-25 119.0 113 63.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 3.3e-25 118.6 115 59.1
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 3.3e-25 118.6 105 66.7
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 4.3e-25 118.2 112 58.9
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 7.3e-25 117.5 112 59.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 9.6e-25 117.1 115 62.6
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 1.3e-24 116.7 113 57.5
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.3e-24 116.7 112 58.9
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-24 116.3 110 59.1
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.1e-24 115.9 115 61.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 2.1e-24 115.9 115 60.9
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.8e-24 115.5 79 83.5
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 2.8e-24 115.5 112 59.8
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 2.8e-24 115.5 115 60.9
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 6.2e-24 114.4 113 57.5
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.4e-23 113.2 85 76.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 5.3e-23 111.3 112 55.4
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 6.9e-23 110.9 112 60.7
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.2e-22 110.2 112 57.1
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 1.5e-22 109.8 84 75.0
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 1.5e-22 109.8 112 56.2
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 2.0e-22 109.4 115 57.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 2.0e-22 109.4 113 54.0
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 2.0e-22 109.4 115 57.4
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 2.6e-22 109.0 112 58.0
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 2.6e-22 109.0 112 58.9
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.6e-22 109.0 93 68.8
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 4.4e-22 108.2 112 58.0
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.6e-22 107.5 112 58.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 9.9e-22 107.1 93 68.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-21 106.7 112 55.4
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.3e-21 106.7 115 51.3
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 1.3e-21 106.7 104 60.6
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.7e-21 106.3 112 55.4
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.2e-21 105.9 112 57.1
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.9e-21 105.5 112 58.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 2.9e-21 105.5 115 51.3
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 4.9e-21 104.8 115 53.0
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 6.4e-21 104.4 112 57.1
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 1.4e-20 103.2 112 54.5
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 2.4e-20 102.4 115 52.2
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 3.2e-20 102.1 112 56.2
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 3.2e-20 102.1 112 55.4
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 9.3e-20 100.5 115 50.4
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 9.3e-20 100.5 90 64.4
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 2.7e-19 99.0 90 61.1
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 3.5e-19 98.6 88 64.8
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 6.0e-19 97.8 112 52.7
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 7.9e-19 97.4 89 61.8
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 1.0e-18 97.1 84 61.9
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.3e-18 96.7 115 52.2
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 2.3e-18 95.9 112 50.9
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.0e-18 95.5 115 49.6
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 5.1e-18 94.7 112 50.9
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 5.1e-18 94.7 112 50.9
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 6.6e-18 94.4 115 50.4
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 8.7e-18 94.0 115 54.8
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.9e-17 92.8 112 50.0
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 1.9e-17 92.8 83 60.2
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 3.3e-17 92.0 86 62.8
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 4.3e-17 91.7 112 50.0
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 4.3e-17 91.7 115 49.6
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 5.6e-17 91.3 112 50.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 7.3e-17 90.9 113 49.6
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 7.3e-17 90.9 89 61.8
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 9.6e-17 90.5 113 47.8
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 2.1e-16 89.4 85 61.2
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 2.1e-16 89.4 87 60.9
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 8.1e-16 87.4 107 50.5
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 1.4e-15 86.7 83 60.2
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.4e-15 86.7 113 45.1
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 1.8e-15 86.3 109 48.6
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-15 86.3 113 45.1
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 2.4e-15 85.9 115 51.3
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 5.3e-15 84.7 107 49.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 5.3e-15 84.7 107 49.5
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 5.3e-15 84.7 107 49.5
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 5.3e-15 84.7 107 49.5
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 6.9e-15 84.3 105 46.7
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 6.9e-15 84.3 115 48.7
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.2e-14 83.6 112 50.0
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.2e-14 83.6 100 51.0
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.5e-14 83.2 115 46.1
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.0e-14 82.8 81 58.0
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 2.0e-14 82.8 113 44.2
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 2.0e-14 82.8 74 64.9
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 2.6e-14 82.4 136 44.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.4e-14 82.0 98 51.0
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 3.4e-14 82.0 98 51.0
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.5e-14 81.6 84 58.3
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 4.5e-14 81.6 89 52.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 5.8e-14 81.3 113 43.4
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.8e-14 81.3 113 43.4
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.9e-14 80.5 120 45.0
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 1.3e-13 80.1 103 45.6
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 1.7e-13 79.7 106 44.3
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 6.4e-13 77.8 121 45.5
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 6.4e-13 77.8 121 45.5
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 6.4e-13 77.8 121 45.5
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 6.4e-13 77.8 89 51.7
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 2.4e-12 75.9 92 51.1
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 4.2e-12 75.1 62 67.7
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.9e-10 68.6 136 39.7
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 5.1e-10 68.2 107 41.1
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 6.7e-10 67.8 81 48.1
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 1.1e-09 67.0 61 60.7
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 4.8e-08 61.6 134 37.3
COL.COLO4_15711 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.9e-07 57.8 58 55.2
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 3.4e-06 55.5 63 49.2


User provided reference genes

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