Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 1.2e-65 253.1 131 100.0
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 9.5e-63 243.4 131 94.7
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 2.1e-62 242.3 131 93.1
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 2.8e-62 241.9 131 93.9
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.4e-60 234.6 131 90.8
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.9e-59 231.9 131 89.3
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 8.3e-59 230.3 132 90.2
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 5.4e-58 227.6 131 88.5
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.6e-57 226.1 131 87.8
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 3.5e-57 224.9 131 87.0
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 7.8e-57 223.8 131 86.3
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 1.3e-56 223.0 131 87.8
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 1.7e-56 222.6 131 86.3
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 86.3
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 87.0
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 85.5
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 85.5
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 87.0
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 86.3
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 86.3
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 3.3e-55 218.4 132 85.6
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 83.2
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.7
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 85.5
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 86.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 86.4
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 7.3e-55 217.2 131 82.4
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 7.3e-55 217.2 131 82.4
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 7.3e-55 217.2 133 85.7
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 9.5e-55 216.9 132 84.8
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 132 84.8
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 132 84.8
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 9.5e-55 216.9 132 84.8
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 84.8
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 84.7
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 85.5
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 84.7
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 2.8e-54 215.3 131 81.7
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 83.2
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 84.7
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 82.4
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 8.1e-54 213.8 131 84.0
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 83.2
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 83.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.1e-53 213.4 134 85.8
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 83.2
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 84.0
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 82.4
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 2.3e-53 212.2 133 83.5
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.3e-53 212.2 132 83.3
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.1e-53 211.8 130 83.1
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 3.1e-53 211.8 130 83.1
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 4.0e-53 211.5 133 82.0
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 83.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 84.7
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 82.4
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.8e-53 210.7 132 82.6
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 6.8e-53 210.7 132 82.6
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 81.7
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 80.9
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 81.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 81.7
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 79.4
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 80.2
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.5e-52 209.5 132 84.1
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.5e-52 209.5 131 83.2
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.0e-52 209.1 131 79.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.6e-52 208.8 131 80.2
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.6e-52 208.8 130 82.3
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.6e-52 208.8 130 82.3
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 83.3
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.4e-52 208.4 130 82.3
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 81.7
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 4.4e-52 208.0 130 82.3
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 5.8e-52 207.6 132 81.1
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 7.6e-52 207.2 130 81.5
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 7.6e-52 207.2 130 83.1
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 81.8
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 83.3
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 80.8
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.2e-51 205.7 130 80.8
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.2e-51 205.7 132 83.3
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 2.9e-51 205.3 131 77.9
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 2.9e-51 205.3 126 82.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 3.7e-51 204.9 131 80.9
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 4.9e-51 204.5 129 82.2
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 78.6
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 6.4e-51 204.1 130 82.3
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.9e-50 202.6 134 79.9
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.4e-50 202.2 130 80.0
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.2e-50 201.8 131 81.7
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 78.6
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 77.9
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 7.1e-50 200.7 132 80.3
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.2e-49 199.9 133 80.5
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.2e-49 199.9 130 79.2
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.1e-49 199.1 132 79.5
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 4.6e-49 198.0 132 78.0
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 6.0e-49 197.6 130 78.5
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 6.0e-49 197.6 132 80.3
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 7.8e-49 197.2 131 79.4
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 77.9
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 77.1
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.3e-48 196.4 131 77.1
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.7e-48 196.1 130 79.2
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.7e-48 196.1 130 79.2
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 80.3
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 76.5
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 5.1e-48 194.5 130 76.2
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 5.1e-48 194.5 133 78.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 75.4
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 78.5
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.5e-47 193.0 124 79.0
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.9e-47 192.6 163 66.3
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 78.0
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 9.6e-47 190.3 132 75.8
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 3.1e-45 185.3 129 76.7
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.0e-45 184.9 104 90.4
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 4.0e-45 184.9 130 75.4
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 6.8e-45 184.1 130 75.4
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 6.8e-45 184.1 137 74.5
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 5.8e-44 181.0 103 87.4
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.9e-43 178.7 131 71.8
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.4e-42 176.4 130 71.5
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.6e-41 171.4 124 75.0
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 4.6e-41 171.4 133 69.9
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.0e-40 168.7 132 68.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.0e-40 168.7 132 70.5
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.9e-40 168.3 124 70.2
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 4.8e-38 161.4 121 71.1
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 6.9e-37 157.5 133 63.9
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.3e-35 153.3 129 68.2
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 8.4e-35 150.6 129 67.4
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.6e-33 144.8 132 62.1
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.9e-31 139.4 121 66.1
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 5.1e-24 114.8 127 52.0
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 2.1e-22 109.4 71 78.9
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 6.9e-21 104.4 117 52.1
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 9.3e-18 94.0 68 72.1
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 9.0e-13 77.4 48 79.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 6.1e-09 64.7 92 40.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 6.7e-08 61.2 78 42.3


User provided reference genes

Program Settings