Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1872.5 Capsicum annuum HOM05D006638 ORTHO05D008246 7.4e-130 467.2 238 100.0
PGSC0003DMG400025975 Solanum tuberosum HOM05D006638 ORTHO05D008246 1.7e-97 359.8 207 88.9
Solyc01g090880.3 Solanum lycopersicum HOM05D006638 ORTHO05D008246 1.8e-96 356.3 204 89.7
Sopen01g036620 Solanum pennellii HOM05D006638 ORTHO05D008246 4.5e-95 351.7 204 89.2
Nitab4.5_0011151g0010 Nicotiana tabacum HOM05D006638 ORTHO05D008246 8.5e-94 347.4 207 86.0
Nitab4.5_0000859g0190 Nicotiana tabacum HOM05D006638 ORTHO05D008246 1.4e-91 340.1 205 85.9
Peaxi162Scf00803g00218 Petunia axillaris HOM05D006638 ORTHO05D008246 2.0e-79 299.7 207 75.8
Dinv44116 Davidia involucrata HOM05D006638 ORTHO05D008246 5.7e-74 281.6 209 68.9
Rhsim05G0215700 Rhododendron simsii HOM05D006638 ORTHO05D008246 4.8e-73 278.5 193 72.5
FvH4_7g11040 Fragaria vesca HOM05D006638 ORTHO05D008246 1.4e-72 276.9 194 71.1
FAN06G4764 Fragaria x ananassa HOM05D006638 ORTHO05D008246 1.4e-72 276.9 194 71.1
Hma1.2p1_0001F.1_g001240 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 2.4e-72 276.2 187 73.8
FAN03G2254 Fragaria x ananassa HOM05D006638 ORTHO05D008246 5.4e-72 275.0 194 70.1
FAN10G2039 Fragaria x ananassa HOM05D006638 ORTHO05D008246 7.0e-72 274.6 194 70.6
FAN10G1288 Fragaria x ananassa HOM05D006638 ORTHO05D008246 9.1e-72 274.2 194 70.6
RcHm_v2.0_Chr1g0349031 Rosa chinensis HOM05D006638 ORTHO05D008246 9.1e-72 274.2 194 70.1
Lj7A537T49 Lonicera japonica HOM05D006638 ORTHO05D008246 2.7e-71 272.7 217 67.7
Glyma.03G033200 Glycine max HOM05D006638 ORTHO05D008246 5.9e-71 271.6 191 71.2
Lalb_Chr07g0190301 Lupinus albus HOM05D006638 ORTHO05D008246 5.9e-71 271.6 191 71.2
QL04p037061 Quercus lobata HOM05D006638 ORTHO05D008246 5.9e-71 271.6 202 66.3
arahy.Tifrunner.gnm1.ann1.WQW1G6 Arachis hypogaea HOM05D006638 ORTHO05D008246 1.3e-70 270.4 184 73.9
Haze_02520 Corylus avellana HOM05D006638 ORTHO05D008246 1.3e-70 270.4 190 69.5
Ca_19858_v3 Cicer arietinum L. HOM05D006638 ORTHO05D008246 2.3e-70 269.6 205 66.8
Prupe.2G137100 Prunus persica HOM05D006638 ORTHO05D008246 3.8e-70 268.9 191 69.6
TAR636G0703 Trochodendron aralioides HOM05D006638 ORTHO05D008246 3.8e-70 268.9 197 68.5
Nn2g12739 Nelumbo nucifera HOM05D006638 ORTHO05D008246 5.0e-70 268.5 202 66.8
Atru.chr5.234 Acer truncatum HOM05D006638 ORTHO05D008246 6.6e-70 268.1 184 72.8
PSO170G5140 Papaver somniferum HOM05D006638 ORTHO05D008246 6.6e-70 268.1 211 64.0
Lj3g0022109 Lotus japonicus HOM05D006638 ORTHO05D008246 8.6e-70 267.7 191 68.1
MSTRG.4914 Avicennia marina HOM05D006638 ORTHO05D008246 1.5e-69 266.9 193 71.0
Psat0s3685g0120 Pisum sativum HOM05D006638 ORTHO05D008246 1.5e-69 266.9 189 70.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.9e-69 266.5 193 69.4
Atru.BG.68.p Acer truncatum HOM05D006638 ORTHO05D008246 2.5e-69 266.2 176 76.1
DCAR_029874 Daucus carota HOM05D006638 ORTHO05D008246 2.5e-69 266.2 205 65.9
CiPaw.14G025400 Carya illinoinensis HOM05D006638 ORTHO05D008246 3.3e-69 265.8 191 69.1
Lsat_1_v5_gn_4_45501 Lactuca sativa HOM05D006638 ORTHO05D008246 3.3e-69 265.8 202 68.8
SGA_v2.0_scaffold43G16517 Striga asiatica HOM05D006638 ORTHO05D008246 5.5e-69 265.0 210 66.7
COL.COLO4_12484 Corchorus olitorius HOM05D006638 ORTHO05D008246 9.5e-69 264.2 187 69.0
Migut.N01611 Erythranthe guttata HOM05D006638 ORTHO05D008246 9.5e-69 264.2 216 63.9
arahy.Tifrunner.gnm1.ann1.B645Y9 Arachis hypogaea HOM05D006638 ORTHO05D008246 1.2e-68 263.8 191 71.2
Aqoxy7G00747 Aquilegia oxysepala HOM05D006638 ORTHO05D008246 1.6e-68 263.5 192 67.7
HanXRQChr12g0384211 Helianthus annuus HOM05D006638 ORTHO05D008246 8.0e-68 261.2 190 67.9
MD07G1114500 Malus domestica HOM05D006638 ORTHO05D008246 8.0e-68 261.2 191 67.5
EL10Ac1g00836 Beta vulgaris HOM05D006638 ORTHO05D008246 1.4e-67 260.4 182 71.4
CANSAT56G0739 Cannabis sativa HOM05D006638 ORTHO05D008246 5.2e-67 258.5 193 66.3
Medtr4g027430 Medicago truncatula HOM05D006638 ORTHO05D008246 6.8e-67 258.1 218 61.0
Cpa.g.sc49.148 Carica papaya HOM05D006638 ORTHO05D008246 8.9e-67 257.7 183 70.5
Eucgr.H00160 Eucalyptus grandis HOM05D006638 ORTHO05D008246 1.2e-66 257.3 178 72.5
SalBow1G6174 Salvia bowleyana HOM05D006638 ORTHO05D008246 1.2e-66 257.3 185 70.8
Sabra01G0171300 Salix brachista HOM05D006638 ORTHO05D008246 1.5e-66 256.9 184 70.1
Aa31LG1G2420 Aethionema arabicum HOM05D006638 ORTHO05D008246 2.6e-66 256.1 192 66.1
Thecc.01G384300 Theobroma cacao HOM05D006638 ORTHO05D008246 2.6e-66 256.1 182 69.2
ECA234G0121 Erigeron canadensis HOM05D006638 ORTHO05D008246 3.4e-66 255.8 182 69.2
Potri.004G225600 Populus trichocarpa HOM05D006638 ORTHO05D008246 7.5e-66 254.6 184 69.6
TWI23G0519 Tripterygium wilfordii HOM05D006638 ORTHO05D008246 1.3e-65 253.8 185 69.7
Cc02_g24450 Coffea canephora HOM05D006638 ORTHO05D008246 1.7e-65 253.4 191 69.6
Sc23g0003780 Simmondsia chinensis HOM05D006638 ORTHO05D008246 2.2e-65 253.1 182 70.3
BraA09t41748Z Brassica rapa HOM05D006638 ORTHO05D008246 2.8e-65 252.7 185 67.6
Carub.0001s1192 Capsella rubella HOM05D006638 ORTHO05D008246 4.9e-65 251.9 193 65.8
CDE02G4315 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 8.3e-65 251.1 207 61.8
BcaC07g42567 Brassica carinata HOM05D006638 ORTHO05D008246 1.1e-64 250.8 185 67.0
CsaV3_3G007360 Cucumis sativus L. HOM05D006638 ORTHO05D008246 1.1e-64 250.8 205 63.4
BcaC07g41715 Brassica carinata HOM05D006638 ORTHO05D008246 1.4e-64 250.4 185 66.5
Duzib133G1291 Durio zibethinus HOM05D006638 ORTHO05D008246 1.4e-64 250.4 188 66.5
C08p47510 Brassica napus HOM05D006638 ORTHO05D008246 3.1e-64 249.2 185 66.5
unitig_748.g7114 Utricularia gibba HOM05D006638 ORTHO05D008246 3.1e-64 249.2 181 66.3
ClCG05G000210 Citrullus lanatus HOM05D006638 ORTHO05D008246 5.4e-64 248.4 184 67.4
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 9.2e-64 247.7 199 63.8
Hund17047 Selenicereus undatus HOM05D006638 ORTHO05D008246 9.2e-64 247.7 182 68.1
Lj1g0022300 Lotus japonicus HOM05D006638 ORTHO05D008246 1.2e-63 247.3 196 63.8
BolC8t52292H Brassica oleracea HOM05D006638 ORTHO05D008246 2.0e-63 246.5 185 66.5
Gorai.008G106400 Gossypium raimondii HOM05D006638 ORTHO05D008246 2.0e-63 246.5 189 65.1
AL1G23530 Arabidopsis lyrata HOM05D006638 ORTHO05D008246 2.7e-63 246.1 185 65.9
CARHR012550 Cardamine hirsuta HOM05D006638 ORTHO05D008246 2.7e-63 246.1 185 66.5
Gohir.A12G095100 Gossypium hirsutum HOM05D006638 ORTHO05D008246 4.5e-63 245.4 187 65.8
AT1G12244 Arabidopsis thaliana HOM05D006638 ORTHO05D008246 1.0e-62 244.2 183 65.6
THA.LOC104809455 Tarenaya hassleriana HOM05D006638 ORTHO05D008246 1.0e-62 244.2 193 65.3
Thhalv10008640m.g Eutrema salsugineum HOM05D006638 ORTHO05D008246 1.1e-61 240.7 189 64.0
VMungo0331G0589 Vigna mungo HOM05D006638 ORTHO05D008246 4.7e-60 235.3 191 64.4
Actinidia33482 Actinidia chinensis HOM05D006638 ORTHO05D008246 7.5e-58 228.0 208 63.5
PGR142G0596 Punica granatum HOM05D006638 ORTHO05D008246 9.8e-58 227.6 225 54.7
HPP92_022319 Vanilla planifolia HOM05D006638 ORTHO05D008246 2.9e-57 226.1 174 66.7
HPP92_022327 Vanilla planifolia HOM05D006638 ORTHO05D008246 3.2e-56 222.6 174 65.5
TAR629G0886 Trochodendron aralioides HOM05D006638 ORTHO05D008246 1.3e-54 217.2 190 61.1
Phvul.010G071600 Phaseolus vulgaris HOM05D006638 ORTHO05D008246 2.8e-52 209.5 131 76.3
CSS0019813 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 4.7e-52 208.8 224 54.5
MELO3C005958.2 Cucumis melo HOM05D006638 ORTHO05D008246 1.4e-51 207.2 290 44.1
Os10g0555200 Oryza sativa ssp. japonica HOM05D006638 ORTHO05D008246 3.1e-51 206.1 180 61.7
Sp1g10860 Schrenkiella parvula HOM05D006638 ORTHO05D008246 4.0e-51 205.7 185 58.9
CSS0044007 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 1.5e-50 203.8 220 54.5
Manes.17G011000 Manihot esculenta HOM05D006638 ORTHO05D008246 8.3e-49 198.0 136 72.1
Ah.01g003990 Amaranthus hybridus HOM05D006638 ORTHO05D008246 9.2e-48 194.5 138 71.7
TPR.G27556 Trifolium pratense HOM05D006638 ORTHO05D008246 3.9e-46 189.1 128 70.3
ATR0317G113 Amborella trichopoda HOM05D006638 ORTHO05D008246 7.3e-45 184.9 145 60.0
MBI04_g09497_MAGBIO Magnolia biondii HOM05D006638 ORTHO05D008246 7.3e-45 184.9 203 53.2
Sed0019776 Sechium edule HOM05D006638 ORTHO05D008246 7.3e-45 184.9 129 69.0
Gohir.D12G097700 Gossypium hirsutum HOM05D006638 ORTHO05D008246 2.8e-44 183.0 127 70.1
Zm00001eb023510 Zea mays HOM05D006638 ORTHO05D008246 8.1e-44 181.4 154 64.3
vmacro21035 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 3.4e-42 176.0 116 77.6
Hma1.2p1_0001F.1_g001250 Hydrangea macrophylla HOM05D006638 ORTHO05D008246 5.4e-40 168.7 116 74.1
CSS0006996 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 2.1e-39 166.8 112 75.9
Oeu000021.1 Olea europaea HOM05D006638 ORTHO05D008246 6.0e-39 165.2 109 78.0
CSS0041268 Camellia sinensis var. sinensis HOM05D006638 ORTHO05D008246 4.7e-36 155.6 112 73.2
Mapoly0010s0011 Marchantia polymorpha HOM05D006638 ORTHO05D008246 4.7e-36 155.6 176 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3890 Anthoceros agrestis HOM05D006638 ORTHO05D008246 1.4e-35 154.1 200 45.5
Medtr2g064690 Medicago truncatula HOM05D006638 ORTHO05D008246 4.9e-33 145.6 129 61.2
Pp3c1_23680 Physcomitrium patens HOM05D006638 ORTHO05D008246 4.9e-33 145.6 172 47.1
Rhsim01G0151400 Rhododendron simsii HOM05D006638 ORTHO05D008246 6.4e-33 145.2 106 66.0
FAN01G0965 Fragaria x ananassa HOM05D006638 ORTHO05D008246 4.6e-31 139.0 97 72.2
SMO340G0150 Selaginella moellendorffii HOM05D006638 ORTHO05D008246 1.9e-24 117.1 176 42.6
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.6e-23 114.0 91 61.5
Pp3c1_23620 Physcomitrium patens HOM05D006638 ORTHO05D008246 3.3e-21 106.3 146 43.8
Medtr2g064700 Medicago truncatula HOM05D006638 ORTHO05D008246 1.2e-15 87.8 79 53.2
vmacro21034 Vaccinium macrocarpon HOM05D006638 ORTHO05D008246 1.3e-14 84.3 69 58.0
Lsat_1_v5_gn_6_51920 Lactuca sativa HOM05D006638 ORTHO05D008246 3.0e-14 83.2 71 57.7
CBR_g17705 Chara braunii HOM05D006638 ORTHO05D008246 1.1e-13 81.3 161 34.8
Solyc12g035620.2 Solanum lycopersicum HOM05D006638 ORTHO05D008246 3.7e-12 76.3 48 75.0
Medtr2g064670 Medicago truncatula HOM05D006638 ORTHO05D008246 4.0e-11 72.8 70 50.0
Lsat_1_v5_gn_1_125220 Lactuca sativa HOM05D006638 ORTHO05D008246 1.2e-10 71.2 62 59.7
MELO3C033920.2 Cucumis melo HOM05D006638 ORTHO05D008246 7.1e-08 62.0 50 58.0


User provided reference genes

Program Settings