Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 4.9e-304 1047.3 676 100.0
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 4.0e-213 745.3 677 71.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 1.5e-212 743.4 688 69.6
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 3.4e-212 742.3 692 67.8
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 3.5e-177 625.9 750 59.3
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 5.3e-165 585.5 523 67.9
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 1.1e-151 541.2 495 64.8
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 8.9e-64 249.2 368 45.9
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 1.2e-55 222.2 387 42.1
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.5e-55 221.9 319 42.9
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 1.3e-54 218.8 520 37.3
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 1.3e-54 218.8 362 42.0
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 2.9e-54 217.6 388 37.9
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 3.2e-53 214.2 449 35.4
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 4.2e-53 213.8 385 39.5
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 1.2e-52 212.2 397 39.8
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.1e-52 211.5 407 38.3
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 4.6e-52 210.3 463 36.7
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 6.0e-52 209.9 301 42.9
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 3.0e-51 207.6 300 42.7
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.7e-51 206.1 407 37.6
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 1.9e-50 204.9 497 34.0
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-49 202.2 407 37.3
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-49 202.2 509 37.5
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 3.6e-49 200.7 559 34.7
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 8.1e-49 199.5 508 37.0
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-48 199.1 517 33.7
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.4e-48 198.7 361 38.0
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 2.4e-48 198.0 373 37.3
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 1.2e-47 195.7 362 38.4
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.5e-47 195.3 399 35.6
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 2.6e-47 194.5 351 38.7
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.2e-46 191.4 362 37.8
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 4.9e-46 190.3 419 38.7
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 1.4e-45 188.7 421 34.9
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 1.6e-44 185.3 362 37.3
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.7e-44 184.5 399 33.8
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.7e-44 184.5 399 33.8
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 3.9e-43 180.6 359 33.4
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 1.6e-41 175.3 339 39.2
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 4.8e-41 173.7 401 36.7
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 5.3e-40 170.2 297 41.8
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 6.9e-40 169.9 404 33.4
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.5e-39 168.7 373 34.6
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 3.4e-39 167.5 367 33.5
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 7.6e-39 166.4 377 35.5
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.9e-37 161.8 352 35.8
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 2.7e-36 157.9 452 38.5
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 7.9e-36 156.4 387 32.6
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 2.3e-35 154.8 339 33.6
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 3.0e-35 154.5 369 32.5
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 3.0e-35 154.5 483 34.0
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 1.5e-34 152.1 289 38.8
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 3.3e-34 151.0 386 33.2
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 3.3e-34 151.0 360 33.1
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 4.3e-34 150.6 287 37.6
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 4.3e-34 150.6 287 39.4
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 1.1e-32 146.0 309 36.2
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.8e-32 145.2 319 38.6
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.8e-32 145.2 365 32.9
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.8e-32 145.2 359 33.1
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 2.4e-32 144.8 373 34.0
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 1.2e-31 142.5 315 33.0
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 2.6e-31 141.4 239 42.3
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.0e-30 139.4 314 30.9
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 1.3e-30 139.0 230 37.0
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 3.8e-30 137.5 311 32.8
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 1.1e-29 136.0 389 30.8
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 1.9e-29 135.2 308 34.4
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.6e-28 132.1 294 35.0
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 3.6e-28 131.0 384 29.9
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 4.6e-28 130.6 285 36.1
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.0e-27 127.9 236 36.9
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 1.1e-26 125.9 275 33.8
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 1.1e-26 125.9 269 33.8
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 1.9e-26 125.2 389 29.0
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 2.5e-26 124.8 209 37.3
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 9.7e-26 122.9 275 35.3
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 1.3e-25 122.5 272 39.0
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 4.5e-23 114.0 243 32.5
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 1.0e-22 112.8 299 30.8
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 1.0e-22 112.8 296 30.4
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.3e-22 112.5 289 30.8
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 2.9e-22 111.3 318 33.0
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 5.0e-22 110.5 309 31.4
Lj9P565T15 Lonicera japonica HOM05D006954 ORTHO05D008729 1.2e-20 105.9 101 63.4
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 1.6e-20 105.5 378 26.7
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 4.6e-20 104.0 275 36.4
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 4.6e-20 104.0 275 36.4
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 7.9e-20 103.2 317 28.4
arahy.Tifrunner.gnm1.ann1.ADMQ1S Arachis hypogaea HOM05D006954 ORTHO05D008729 1.4e-19 102.4 284 28.2
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.4e-19 102.4 294 29.9
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.0e-19 101.3 291 29.9
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 3.9e-19 100.9 296 28.7
arahy.Tifrunner.gnm1.ann1.7WP6A4 Arachis hypogaea HOM05D006954 ORTHO05D008729 1.5e-18 99.0 284 27.8
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 8.2e-17 93.2 217 30.9
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 9.1e-16 89.7 328 26.2
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 1.3e-14 85.9 350 26.6
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 3.8e-14 84.3 261 28.7
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.0e-14 84.0 350 26.0
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-13 82.8 314 29.6
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-13 82.4 324 27.2
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.4e-13 82.4 350 26.6
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 2.1e-12 78.6 143 32.9
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 2.7e-12 78.2 308 29.2
QL04p036188 Quercus lobata HOM05D006954 ORTHO05D008729 6.1e-12 77.0 298 29.2
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 2.6e-10 71.6 345 26.1
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 5.7e-10 70.5 285 25.3
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 7.4e-10 70.1 140 32.9
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.7e-09 68.9 311 25.7
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 2.8e-09 68.2 386 26.9
Sopen06g020850 Solanum pennellii HOM05D020458 ORTHO05D022160 2.8e-09 68.2 96 40.6
Solyc06g060730.3 Solanum lycopersicum HOM05D020458 ORTHO05D022160 3.7e-09 67.8 82 39.0
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 4.1e-08 64.3 191 30.4
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 7.0e-08 63.5 182 30.2
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 7.0e-08 63.5 189 29.6
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 9.1e-08 63.2 214 25.7
PGSC0003DMG400011881 Solanum tuberosum HOM05D020458 ORTHO05D022160 9.1e-08 63.2 99 37.4
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.1e-08 63.2 199 30.2
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.2e-07 62.8 188 28.7
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.6e-07 62.4 304 25.3
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 2.6e-07 61.6 185 29.7
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 4.5e-07 60.8 249 27.7
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 5.9e-07 60.5 188 27.1
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 5.9e-07 60.5 188 28.7
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 5.9e-07 60.5 226 27.4
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 5.9e-07 60.5 207 29.5
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 7.7e-07 60.1 251 27.5
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 7.7e-07 60.1 192 28.1
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 2.9e-06 58.2 202 26.7
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 3.8e-06 57.8 199 26.1
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 5.0e-06 57.4 299 25.4
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 5.0e-06 57.4 199 27.6
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 6.5e-06 57.0 204 27.9
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 6.5e-06 57.0 281 27.4
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 6.5e-06 57.0 202 27.7
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 6.5e-06 57.0 188 28.2
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 8.5e-06 56.6 216 27.3
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 8.5e-06 56.6 188 25.0


User provided reference genes

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