Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 6.9e-142 507.3 256 100.0
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 8.7e-137 490.3 256 95.7
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 6.3e-135 484.2 256 93.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.9e-128 462.6 264 88.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.4e-126 455.7 265 89.1
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.4e-125 451.8 265 85.3
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.9e-125 451.1 265 85.7
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.6e-122 441.8 250 90.4
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 7.9e-122 440.7 259 84.9
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 8.8e-121 437.2 264 83.0
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.0e-120 436.0 265 83.4
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.6e-120 435.6 265 83.4
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 9.7e-120 433.7 262 82.4
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 2.2e-119 432.6 260 82.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.2e-119 432.6 264 81.4
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 2.4e-118 429.1 264 81.4
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.1e-118 428.7 264 80.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.1e-118 428.7 264 81.4
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.3e-118 427.9 264 80.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.3e-118 427.9 262 81.3
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 6.9e-118 427.6 264 80.7
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 9.1e-118 427.2 264 80.3
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-117 426.8 264 79.9
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 2.0e-117 426.0 264 81.1
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 2.0e-117 426.0 264 79.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 2.6e-117 425.6 264 80.3
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.6e-117 425.6 264 81.1
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 4.5e-117 424.9 260 81.2
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.9e-117 424.5 256 82.4
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-116 423.7 263 80.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-116 423.7 264 79.5
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.9e-116 422.2 260 81.2
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 8.5e-116 420.6 264 80.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 8.5e-116 420.6 259 80.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-115 420.2 260 81.2
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.9e-115 419.5 262 80.9
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.5e-115 419.1 261 81.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 4.2e-115 418.3 264 81.8
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 7.2e-115 417.5 264 79.2
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.2e-114 416.8 264 78.4
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.1e-114 416.0 265 79.6
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.1e-114 416.0 264 79.9
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 2.7e-114 415.6 264 79.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.7e-114 415.6 260 82.7
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 3.6e-114 415.2 264 78.8
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.0e-113 413.7 262 80.2
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.4e-113 413.3 262 79.4
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.9e-113 411.8 264 78.4
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 5.2e-113 411.4 263 79.8
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 6.7e-113 411.0 263 78.3
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 6.7e-113 411.0 271 78.2
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.8e-113 410.6 264 77.7
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 8.8e-113 410.6 264 78.0
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 8.8e-113 410.6 264 78.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.1e-112 410.2 261 79.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.1e-112 410.2 264 77.7
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.1e-112 410.2 264 78.4
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 2.6e-112 409.1 260 80.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.4e-112 408.3 270 77.8
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.7e-112 407.9 255 80.4
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.7e-112 407.9 265 78.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.7e-112 407.9 251 80.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.3e-111 406.8 261 79.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 264 78.8
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.8e-111 404.8 254 81.1
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.8e-111 404.8 262 76.7
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 6.3e-111 404.4 250 81.6
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 1.4e-110 403.3 264 78.8
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.4e-110 402.5 287 72.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.1e-110 402.1 262 77.5
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.3e-110 401.4 262 77.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 5.3e-110 401.4 254 80.7
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 7.0e-110 401.0 261 76.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.6e-109 399.8 265 77.4
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 2.0e-109 399.4 264 76.5
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 3.5e-109 398.7 262 77.5
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.5e-109 398.3 266 74.1
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 7.7e-109 397.5 262 76.7
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.7e-109 397.5 262 76.3
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 7.7e-109 397.5 262 76.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.3e-108 396.7 264 77.7
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 2.9e-108 395.6 262 76.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.0e-108 394.8 267 76.4
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.1e-107 393.7 284 72.9
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.5e-107 392.5 257 77.0
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 4.2e-107 391.7 250 78.0
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 4.2e-107 391.7 265 76.2
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.2e-107 391.7 263 76.0
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 7.2e-107 391.0 257 76.7
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.1e-106 387.9 265 75.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 5.2e-105 384.8 264 75.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 8.8e-105 384.0 303 67.3
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-104 382.1 251 75.3
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.7e-104 381.3 308 66.2
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.3e-103 380.2 282 72.3
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 6.3e-103 377.9 259 74.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.1e-102 377.1 264 73.1
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.1e-102 377.1 261 74.3
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 4.1e-102 375.2 256 75.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 5.3e-102 374.8 251 76.5
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.7e-101 370.9 248 75.8
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 6.5e-100 367.9 277 70.0
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.1e-99 367.1 265 69.8
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 2.5e-99 365.9 235 76.6
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 7.2e-99 364.4 248 74.6
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.4e-97 360.1 189 94.2
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 1.8e-97 359.8 263 70.3
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 1.5e-96 356.7 266 69.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.4e-96 355.5 257 70.0
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.4e-96 355.5 257 70.0
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.7e-96 354.8 259 70.3
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.7e-96 354.8 264 68.2
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 7.5e-96 354.4 261 70.1
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 7.5e-96 354.4 261 70.1
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.3e-95 353.6 256 71.9
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 2.2e-95 352.8 265 69.1
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.8e-95 352.4 250 73.6
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 4.8e-95 351.7 261 70.1
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.3e-95 350.9 266 68.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.4e-94 350.1 259 69.5
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 7.0e-94 347.8 261 69.0
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 9.1e-94 347.4 262 69.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.6e-93 346.7 272 69.9
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 3.5e-93 345.5 259 68.7
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 5.9e-93 344.7 262 68.7
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 7.7e-93 344.4 259 68.7
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 7.7e-93 344.4 259 68.7
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.0e-92 344.0 263 67.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.3e-92 342.8 261 68.6
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 5.0e-92 341.7 261 68.6
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.6e-92 341.3 225 76.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.6e-92 341.3 256 70.7
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.5e-91 339.3 257 68.9
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 3.3e-91 339.0 235 73.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.1e-90 336.3 261 67.8
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.6e-90 335.5 252 69.4
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 2.3e-89 332.8 278 64.0
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 3.0e-89 332.4 257 66.9
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.5e-88 330.1 255 67.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.8e-86 323.2 257 66.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 4.1e-86 322.0 199 83.4
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 4.5e-85 318.5 261 64.4
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 5.6e-83 311.6 260 63.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.8e-82 309.3 206 78.2
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.0e-81 307.4 260 63.5
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 9.8e-80 300.8 260 62.7
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-79 300.4 260 62.3
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.9e-78 296.6 257 61.1
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.4e-78 295.0 240 67.5
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.2e-70 269.2 189 73.5
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-69 266.2 144 89.6
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-61 240.0 171 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 2.1e-42 176.8 212 51.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 2.2e-39 166.8 189 48.1
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 5.4e-38 162.2 174 50.6
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.6e-37 159.1 244 42.6
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 9.0e-33 144.8 105 67.6
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.9e-31 139.8 120 62.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-29 134.0 221 41.6
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.6e-29 132.5 93 71.0
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.0e-29 132.1 74 90.5
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 3.1e-25 119.8 76 78.9
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 8.2e-18 95.1 183 36.6
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.1e-17 92.8 86 57.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 7.7e-16 88.6 117 41.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.3e-12 77.0 40 87.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 7.4e-11 72.0 146 36.3
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 2.2e-10 70.5 65 58.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.3e-10 68.9 40 75.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.4e-09 67.8 43 67.4
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.7e-08 62.0 138 31.9
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.7e-07 60.8 86 34.9
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 7.2e-06 55.5 32 87.5


User provided reference genes

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