Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 8.1e-135 483.8 255 100.0
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.9e-92 342.4 259 75.7
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 3.0e-89 332.4 256 72.7
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 5.7e-88 328.2 255 72.5
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 5.7e-88 328.2 255 72.9
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 1.1e-86 323.9 255 72.2
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 6.1e-66 255.0 192 68.2
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 8.0e-66 254.6 188 69.1
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 8.0e-66 254.6 191 68.1
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.4e-65 253.8 220 62.7
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.8e-65 253.4 170 73.5
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 6.8e-65 251.5 168 73.8
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 6.8e-65 251.5 164 75.0
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 3.4e-64 249.2 214 62.1
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 4.4e-64 248.8 222 62.2
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 4.4e-64 248.8 208 60.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 4.4e-64 248.8 189 66.7
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 5.8e-64 248.4 230 59.1
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 7.5e-64 248.1 208 60.6
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.3e-63 247.3 211 64.5
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.7e-63 246.9 230 57.4
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 2.9e-63 246.1 242 56.6
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 6.4e-63 245.0 212 61.3
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.4e-62 243.8 241 58.5
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.4e-62 243.8 193 66.3
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.9e-62 243.4 162 72.8
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 2.4e-62 243.0 169 72.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 2.4e-62 243.0 240 58.8
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 3.2e-62 242.7 186 66.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 4.1e-62 242.3 218 60.6
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 7.0e-62 241.5 218 59.6
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.6e-61 240.4 158 75.3
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.6e-61 240.4 257 60.7
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.0e-61 240.0 199 62.8
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 2.0e-61 240.0 182 67.0
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 2.0e-61 240.0 227 57.7
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.5e-61 239.2 158 74.7
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 6.0e-61 238.4 247 55.9
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 6.0e-61 238.4 159 74.2
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 7.8e-61 238.0 239 56.1
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.3e-60 237.3 181 66.3
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-60 236.9 201 62.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 2.3e-60 236.5 170 69.4
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 3.9e-60 235.7 162 71.0
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 5.0e-60 235.3 201 62.2
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 8.6e-60 234.6 159 74.2
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.1e-59 234.2 163 69.9
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.5e-59 233.8 214 60.3
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 3.3e-59 232.6 235 54.5
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 3.3e-59 232.6 216 59.3
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 3.3e-59 232.6 201 60.7
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 4.3e-59 232.3 247 54.7
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 7.3e-59 231.5 162 71.6
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 7.3e-59 231.5 191 62.8
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 7.3e-59 231.5 195 62.1
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 1.2e-58 230.7 221 56.1
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.2e-58 230.7 207 60.4
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.7e-58 228.8 222 60.4
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 4.7e-58 228.8 223 57.4
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.4e-57 227.3 158 71.5
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-57 226.9 226 56.2
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 1.8e-57 226.9 160 70.0
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.8e-57 226.9 198 61.6
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.3e-57 226.5 162 70.4
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 4.0e-57 225.7 195 63.1
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 8.9e-57 224.6 183 63.9
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.2e-56 224.2 184 63.6
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.2e-56 224.2 161 67.1
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.5e-56 223.8 192 63.5
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.5e-56 223.8 159 68.6
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.0e-56 223.4 214 57.9
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 2.0e-56 223.4 218 58.3
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.0e-56 223.4 226 55.3
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.6e-56 223.0 239 56.9
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.9e-55 219.5 239 54.4
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 4.9e-55 218.8 233 53.6
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 4.9e-55 218.8 165 64.8
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.4e-54 217.2 198 59.6
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.9e-54 216.9 226 54.4
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.9e-54 216.9 160 68.1
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 5.4e-54 215.3 227 55.1
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 5.4e-54 215.3 233 53.2
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 7.1e-54 214.9 251 51.0
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 7.1e-54 214.9 226 54.4
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 7.1e-54 214.9 216 56.5
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.2e-53 214.2 239 55.2
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 2.1e-53 213.4 238 51.3
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.1e-53 213.4 163 65.6
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 3.5e-53 212.6 196 58.7
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 6.0e-53 211.8 228 53.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 7.8e-53 211.5 223 54.3
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 7.8e-53 211.5 223 54.3
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.0e-52 211.1 223 53.8
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.0e-52 211.1 154 66.2
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.3e-52 210.7 155 69.7
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 2.3e-52 209.9 230 50.9
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.2e-50 204.1 214 52.3
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.8e-49 200.3 152 67.8
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-48 197.6 182 59.3
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.5e-48 197.2 164 62.2
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.1e-43 181.0 157 56.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.5e-43 180.6 157 56.1
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.4e-40 169.5 185 49.2
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 9.9e-40 167.9 191 49.7
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 2.2e-39 166.8 156 57.7
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 7.1e-38 161.8 201 48.3
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.7e-36 157.1 189 47.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.8e-34 149.8 211 46.4
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 5.8e-32 142.1 214 44.9
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 7.6e-32 141.7 93 74.2
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.9e-31 139.8 165 45.5
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 3.8e-31 139.4 161 46.0
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 2.3e-28 130.2 81 75.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 3.0e-28 129.8 217 37.3
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.1e-25 119.8 159 41.5
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 3.1e-25 119.8 106 58.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 4.0e-25 119.4 101 62.4
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.2e-24 117.9 81 70.4
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 7.1e-22 108.6 118 54.2
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-21 106.7 154 45.5
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 3.5e-21 106.3 154 45.5
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.9e-20 102.8 137 50.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 8.7e-20 101.7 69 68.1
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 9.6e-19 98.2 116 51.7
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 4.0e-17 92.8 218 32.1
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-16 90.5 93 53.8
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.8e-09 67.4 118 37.3
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.4e-09 67.0 121 37.2
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.9e-09 65.5 60 60.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 6.5e-07 58.9 48 60.4
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 1.9e-06 57.4 150 27.3
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 2.5e-06 57.0 150 27.3
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 4.2e-06 56.2 122 30.3
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 9.3e-06 55.1 150 26.0


User provided reference genes

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