Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1856.3 Capsicum annuum HOM05D000018 ORTHO05D010444 1.4e-52 209.1 95 100.0
Nitab4.5_0006970g0020 Nicotiana tabacum HOM05D000863 ORTHO05D010444 2.0e-41 172.2 94 85.1
Nitab4.5_0006837g0020 Nicotiana tabacum HOM05D000018 ORTHO05D010444 9.7e-41 169.9 94 86.2
Nitab4.5_0007374g0030 Nicotiana tabacum HOM05D000863 ORTHO05D010444 5.3e-39 164.1 95 82.1
Nitab4.5_0000662g0210 Nicotiana tabacum HOM05D000018 ORTHO05D010444 1.5e-38 162.5 95 81.1
CAN.G708.2 Capsicum annuum HOM05D000018 ORTHO05D010444 4.5e-38 161.0 96 81.2
Solyc12g013780.3 Solanum lycopersicum HOM05D000018 ORTHO05D010444 2.1e-35 152.1 96 75.0
Peaxi162Scf00000g00426 Petunia axillaris HOM05D000018 ORTHO05D010444 1.5e-33 146.0 96 77.1
Sopen12g007090 Solanum pennellii HOM05D000001 ORTHO05D000424 6.5e-29 130.6 82 73.2
Dinv21685 Davidia involucrata HOM05D000018 ORTHO05D010444 1.3e-24 116.3 94 56.4
TAR375G0556 Trochodendron aralioides HOM05D000018 ORTHO05D010444 4.8e-24 114.4 94 54.3
CSS0003495 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D010444 1.4e-23 112.8 94 58.5
FAN13G1796 Fragaria x ananassa HOM05D000018 ORTHO05D010444 2.0e-22 109.0 94 54.3
Prupe.5G060600 Prunus persica HOM05D000018 ORTHO05D010444 2.7e-22 108.6 94 53.2
Migut.A01030 Erythranthe guttata HOM05D000018 ORTHO05D010444 3.5e-22 108.2 95 51.6
RcHm_v2.0_Chr7g0204791 Rosa chinensis HOM05D000018 ORTHO05D010444 3.5e-22 108.2 94 54.3
FAN08G1476 Fragaria x ananassa HOM05D000018 ORTHO05D010444 4.5e-22 107.8 94 54.3
Actinidia31504 Actinidia chinensis HOM05D000018 ORTHO05D010444 5.9e-22 107.5 94 54.3
FvH4_5g19970 Fragaria vesca HOM05D000018 ORTHO05D010444 5.9e-22 107.5 94 53.2
FAN18G2860 Fragaria x ananassa HOM05D000018 ORTHO05D010444 5.9e-22 107.5 94 53.2
Cfa012677 Carpinus fangiana HOM05D000018 ORTHO05D010444 1.0e-21 106.7 94 54.3
SalBow6G5743 Salvia bowleyana HOM05D000018 ORTHO05D010444 6.5e-21 104.0 88 55.7
Haze_07968 Corylus avellana HOM05D000018 ORTHO05D010444 8.5e-21 103.6 94 54.3
DCAR_008339 Daucus carota HOM05D000018 ORTHO05D010444 7.2e-20 100.5 94 51.1
QL12p009593 Quercus lobata HOM05D000018 ORTHO05D010444 9.4e-20 100.1 97 50.5
GSVIVG01004790001 Vitis vinifera HOM05D000018 ORTHO05D010444 3.6e-19 98.2 94 53.2
PSO675G0667 Papaver somniferum HOM05D000018 ORTHO05D010444 4.7e-19 97.8 90 45.6
ATR0057G013 Amborella trichopoda HOM05D000018 ORTHO05D010444 1.2e-17 93.2 91 42.9
SEGI_17285 Sequoiadendron giganteum HOM05D000018 ORTHO05D010444 4.2e-12 74.7 77 41.6
MBI04_g22916_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D010444 3.6e-11 71.6 77 39.0
Pp3c16_9590 Physcomitrium patens HOM05D000018 ORTHO05D010444 8.8e-10 67.0 91 29.7
THA.LOC104821327 Tarenaya hassleriana HOM05D000018 ORTHO05D003948 7.5e-09 63.9 94 39.4
Pp3c25_8200 Physcomitrium patens HOM05D000018 ORTHO05D010444 1.3e-08 63.2 90 27.8
SHI08512 Sapria himalayana HOM05D000018 ORTHO05D003948 1.3e-08 63.2 80 35.0
SMO199G0109 Selaginella moellendorffii HOM05D000018 ORTHO05D010444 1.3e-08 63.2 75 32.0
Lalb_Chr09g0321711 Lupinus albus HOM05D000018 ORTHO05D003948 2.8e-08 62.0 85 38.8
AagrBONN_evm.TU.Sc2ySwM_117.2989 Anthoceros agrestis HOM05D000018 ORTHO05D010444 3.7e-08 61.6 99 31.3
Pp3c6_6220 Physcomitrium patens HOM05D000018 ORTHO05D010444 3.7e-08 61.6 91 29.7
Psat4g099800 Pisum sativum HOM05D000018 ORTHO05D003948 4.9e-08 61.2 83 39.8
Psat4g099840 Pisum sativum HOM05D000018 ORTHO05D003948 4.9e-08 61.2 83 39.8
Ca_22375_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 6.3e-08 60.8 79 38.0
Lsat_1_v5_gn_3_74560 Lactuca sativa HOM05D000018 ORTHO05D003948 6.3e-08 60.8 88 36.4
Lj4A24T50 Lonicera japonica HOM05D000018 ORTHO05D003948 6.3e-08 60.8 93 32.3
Ca_25823_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 8.3e-08 60.5 80 36.2
Migut.N03161 Erythranthe guttata HOM05D000018 ORTHO05D003948 8.3e-08 60.5 94 39.4
Lalb_Chr16g0391241 Lupinus albus HOM05D000018 ORTHO05D003948 1.1e-07 60.1 85 37.6
VMungo0251G1315 Vigna mungo HOM05D000018 ORTHO05D003948 1.4e-07 59.7 70 40.0
Dinv39519 Davidia involucrata HOM05D000018 ORTHO05D003948 1.8e-07 59.3 80 35.0
Gohir.A11G175300 Gossypium hirsutum HOM05D000018 ORTHO05D003948 1.8e-07 59.3 72 41.7
Lj3g0023841 Lotus japonicus HOM05D000018 ORTHO05D003948 1.8e-07 59.3 70 41.4
PGR119G2467 Punica granatum HOM05D000018 ORTHO05D003948 1.8e-07 59.3 71 39.4
Migut.C00836 Erythranthe guttata HOM05D000018 ORTHO05D003948 2.4e-07 58.9 81 42.0
PGSC0003DMG400003563 Solanum tuberosum HOM05D000018 ORTHO05D003948 2.4e-07 58.9 82 39.0
C08p26510 Brassica napus HOM05D000018 ORTHO05D003948 3.1e-07 58.5 93 36.6
Glyma.02G048400 Glycine max HOM05D000018 ORTHO05D003948 3.1e-07 58.5 70 41.4
Glyma.02G048600 Glycine max HOM05D000018 ORTHO05D003948 3.1e-07 58.5 70 41.4
Lj2A610G29 Lonicera japonica HOM05D000018 ORTHO05D003948 3.1e-07 58.5 77 35.1
Lalb_Chr19g0124151 Lupinus albus HOM05D000018 ORTHO05D003948 3.1e-07 58.5 70 40.0
PSO541G2798 Papaver somniferum HOM05D000018 ORTHO05D003948 3.1e-07 58.5 78 37.2
Peaxi162Scf00328g01214 Petunia axillaris HOM05D000018 ORTHO05D003948 3.1e-07 58.5 80 36.2
Psat4g097880 Pisum sativum HOM05D000018 ORTHO05D003948 3.1e-07 58.5 79 35.4
BcaB01g00539 Brassica carinata HOM05D000018 ORTHO05D003948 4.1e-07 58.2 93 36.6
Aa31LG4G19270 Aethionema arabicum HOM05D000018 ORTHO05D003948 5.4e-07 57.8 93 36.6
CARHR160820 Cardamine hirsuta HOM05D000018 ORTHO05D003948 5.4e-07 57.8 77 39.0
Lj4g0003068 Lotus japonicus HOM05D000018 ORTHO05D003948 5.4e-07 57.8 70 41.4
Nn1g05894 Nelumbo nucifera HOM05D000018 ORTHO05D003948 5.4e-07 57.8 77 37.7
PSO675G4501 Papaver somniferum HOM05D000018 ORTHO05D003948 5.4e-07 57.8 81 35.8
Pp3c27_4790 Physcomitrium patens HOM05D000018 ORTHO05D010444 5.4e-07 57.8 78 35.9
Gohir.D11G182800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 7.0e-07 57.4 72 40.3
Gorai.007G194700 Gossypium raimondii HOM05D000018 ORTHO05D003948 7.0e-07 57.4 72 40.3
MD15G1246200 Malus domestica HOM05D000018 ORTHO05D003948 7.0e-07 57.4 80 35.0
Medtr8g075890 Medicago truncatula HOM05D000018 ORTHO05D003948 7.0e-07 57.4 70 38.6
Sabra05G0093200 Salix brachista HOM05D000018 ORTHO05D003948 7.0e-07 57.4 80 36.2
Sabra05G0093300 Salix brachista HOM05D000018 ORTHO05D003948 7.0e-07 57.4 80 36.2
Sc26g0004400 Simmondsia chinensis HOM05D000018 ORTHO05D003948 7.0e-07 57.4 80 36.2
Actinidia28704 Actinidia chinensis HOM05D000018 ORTHO05D003948 9.2e-07 57.0 80 36.2
Aqoxy2G02048 Aquilegia oxysepala HOM05D000018 ORTHO05D003948 9.2e-07 57.0 70 35.7
EL10Ac1g02207 Beta vulgaris HOM05D000018 ORTHO05D003948 9.2e-07 57.0 82 35.4
BolC8t50265H Brassica oleracea HOM05D000018 ORTHO05D003948 9.2e-07 57.0 93 35.5
CSS0019002 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D003948 9.2e-07 57.0 80 33.8
Ca_22376_v3 Cicer arietinum L. HOM05D000018 ORTHO05D003948 9.2e-07 57.0 73 38.4
Glyma.01G166200 Glycine max HOM05D000018 ORTHO05D003948 9.2e-07 57.0 80 36.2
TPR.G39926 Trifolium pratense HOM05D000018 ORTHO05D003948 9.2e-07 57.0 84 36.9
AL5G31640 Arabidopsis lyrata HOM05D000018 ORTHO05D003948 1.2e-06 56.6 77 39.0
Carub.0005s1761 Capsella rubella HOM05D000018 ORTHO05D003948 1.2e-06 56.6 93 36.6
CDE05G0544 Ceratophyllum demersum HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 36.2
Cc07_g10740 Coffea canephora HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 32.5
Hma1.2p1_0956F.1_g241310 Hydrangea macrophylla HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 33.8
MD02G1132200 Malus domestica HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 36.2
Medtr5g022020 Medicago truncatula HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 35.0
Nn5g30144 Nelumbo nucifera HOM05D000018 ORTHO05D003948 1.2e-06 56.6 77 35.1
Potri.005G113700 Populus trichocarpa HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 35.0
Sp5g10980 Schrenkiella parvula HOM05D000018 ORTHO05D003948 1.2e-06 56.6 93 36.6
vmacro04354 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 35.0
vmacro22890 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 1.2e-06 56.6 80 35.0
AT3G51240 Arabidopsis thaliana HOM05D000018 ORTHO05D003948 1.6e-06 56.2 93 36.6
EL10Ac1g02209 Beta vulgaris HOM05D000018 ORTHO05D003948 1.6e-06 56.2 69 39.1
C07p46240 Brassica napus HOM05D000441 ORTHO05D000340 1.6e-06 56.2 77 39.0
BolC7t45140H Brassica oleracea HOM05D000018 ORTHO05D003948 1.6e-06 56.2 77 39.0
Psat4g100080 Pisum sativum HOM05D000018 ORTHO05D003948 1.6e-06 56.2 70 38.6
Potri.005G113900 Populus trichocarpa HOM05D000018 ORTHO05D003948 1.6e-06 56.2 80 35.0
Sopen02g028650 Solanum pennellii HOM05D000018 ORTHO05D003948 1.6e-06 56.2 80 35.0
TAR628G0707 Trochodendron aralioides HOM05D000018 ORTHO05D003948 1.6e-06 56.2 77 35.1
Ah.03g148770 Amaranthus hybridus HOM05D000018 ORTHO05D003948 2.0e-06 55.8 70 34.3
AUR62003368 Chenopodium quinoa HOM05D000018 ORTHO05D003948 2.0e-06 55.8 88 34.1
Gohir.A12G059400 Gossypium hirsutum HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 36.2
Gohir.D12G059800 Gossypium hirsutum HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 36.2
Gorai.008G062900 Gossypium raimondii HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 36.2
Oeu046264.1 Olea europaea HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 36.2
Prupe.7G168300 Prunus persica HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 33.8
Solyc02g083860.3 Solanum lycopersicum HOM05D000018 ORTHO05D003948 2.0e-06 55.8 80 35.0
A09p44250 Brassica napus HOM05D000018 ORTHO05D003948 2.7e-06 55.5 93 35.5
BraA09t39887Z Brassica rapa HOM05D000018 ORTHO05D003948 2.7e-06 55.5 93 35.5
COL.COLO4_21907 Corchorus olitorius HOM05D000018 ORTHO05D003948 2.7e-06 55.5 70 40.0
SEGI_24255 Sequoiadendron giganteum HOM05D000018 ORTHO05D003948 2.7e-06 55.5 81 33.3
EL10Ac1g02215 Beta vulgaris HOM05D000018 ORTHO05D003948 3.5e-06 55.1 77 37.7
ClCG10G000740 Citrullus lanatus HOM05D000018 ORTHO05D003948 3.5e-06 55.1 80 35.0
Haze_03762 Corylus avellana HOM05D000018 ORTHO05D003948 3.5e-06 55.1 80 32.5
Lj1g0022037 Lotus japonicus HOM05D000018 ORTHO05D001920 3.5e-06 55.1 86 36.0
Rhsim08G0033600 Rhododendron simsii HOM05D000018 ORTHO05D003948 3.5e-06 55.1 80 35.0
SGA_v2.0_scaffold92G28229 Striga asiatica HOM05D000018 ORTHO05D003948 3.5e-06 55.1 71 39.4
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.5e-06 55.1 70 35.7
vmacro18413 Vaccinium macrocarpon HOM05D000018 ORTHO05D003948 3.5e-06 55.1 80 35.0
arahy.Tifrunner.gnm1.ann1.79B99S Arachis hypogaea HOM05D000018 ORTHO05D003948 4.5e-06 54.7 77 33.8
arahy.Tifrunner.gnm1.ann1.HE8J5U Arachis hypogaea HOM05D000018 ORTHO05D003948 4.5e-06 54.7 77 33.8
CANSAT25G2993 Cannabis sativa HOM05D000018 ORTHO05D003948 4.5e-06 54.7 92 34.8
AUR62029466 Chenopodium quinoa HOM05D000018 ORTHO05D003948 4.5e-06 54.7 88 33.0
Duzib264G0186 Durio zibethinus HOM05D000018 ORTHO05D003948 4.5e-06 54.7 70 37.1
Nitab4.5_0000864g0050 Nicotiana tabacum HOM05D000018 ORTHO05D003948 4.5e-06 54.7 81 33.3
Pp3c5_2410 Physcomitrium patens HOM05D000018 ORTHO05D010444 4.5e-06 54.7 95 31.6
Sed0005336 Sechium edule HOM05D000018 ORTHO05D003948 4.5e-06 54.7 71 38.0
AUR62033907 Chenopodium quinoa HOM05D000018 ORTHO05D003948 5.9e-06 54.3 79 39.2
CsaV3_3G000790 Cucumis sativus L. HOM05D000018 ORTHO05D003948 5.9e-06 54.3 69 40.6
ECA246G1375 Erigeron canadensis HOM05D000018 ORTHO05D003948 5.9e-06 54.3 84 31.0
FvH4_1g11810 Fragaria vesca HOM05D000018 ORTHO05D003948 5.9e-06 54.3 71 33.8
FAN19G1561 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.9e-06 54.3 71 33.8
FAN26G0281 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.9e-06 54.3 71 33.8
FAN28G0388 Fragaria x ananassa HOM05D000018 ORTHO05D003948 5.9e-06 54.3 71 33.8
Glyma.16G128700 Glycine max HOM05D000018 ORTHO05D003948 5.9e-06 54.3 70 35.7
Mapoly0191s0006 Marchantia polymorpha HOM05D000018 ORTHO05D001172 5.9e-06 54.3 71 36.6
Phvul.003G261900 Phaseolus vulgaris HOM05D000018 ORTHO05D003948 5.9e-06 54.3 70 40.0
FAN23G2908 Fragaria x ananassa HOM05D000018 ORTHO05D003948 7.8e-06 53.9 71 33.8
Nitab4.5_0026775g0010 Nicotiana tabacum HOM05D000018 ORTHO05D003948 7.8e-06 53.9 81 33.3
RhsimUnG0066200 Rhododendron simsii HOM05D000018 ORTHO05D003948 7.8e-06 53.9 81 34.6
RcHm_v2.0_Chr2g0099421 Rosa chinensis HOM05D000018 ORTHO05D003948 7.8e-06 53.9 71 33.8


User provided reference genes

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