Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G185.20 Capsicum annuum HOM05D000424 ORTHO05D000355 5.0e-60 234.6 148 100.0
CAN.G3948.1 Capsicum annuum HOM05D000424 ORTHO05D000355 5.7e-48 194.5 161 80.7
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 9.8e-40 167.2 173 72.3
Sopen05g004160 Solanum pennellii HOM05D000424 ORTHO05D000355 2.2e-39 166.0 173 71.1
Solyc05g008330.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.4e-38 163.3 170 71.2
PGSC0003DMG400030554 Solanum tuberosum HOM05D000424 ORTHO05D000355 7.0e-38 161.0 173 69.9
Peaxi162Scf00205g00026 Petunia axillaris HOM05D000424 ORTHO05D000355 3.4e-32 142.1 168 67.3
CAN.G1334.16 Capsicum annuum HOM05D000424 ORTHO05D000355 5.8e-32 141.4 114 63.2
CAN.G1693.17 Capsicum annuum HOM05D000424 ORTHO05D000355 8.3e-31 137.5 124 83.9
ClCG01G006140 Citrullus lanatus HOM05D000424 ORTHO05D000355 3.3e-27 125.6 132 72.7
TWI79G0176 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 6.2e-26 121.3 104 58.7
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 8.0e-26 120.9 170 37.1
CiPaw.06G013000 Carya illinoinensis HOM05D000424 ORTHO05D000355 8.0e-26 120.9 131 74.0
TWI79G1119 Tripterygium wilfordii HOM05D005362 ORTHO05D000355 1.1e-25 120.6 101 60.4
CsaV3_5G028520 Cucumis sativus L. HOM05D000424 ORTHO05D000355 2.3e-25 119.4 132 68.2
CANSAT01G3162 Cannabis sativa HOM05D000424 ORTHO05D000355 2.0e-24 116.3 132 68.2
QL01p002086 Quercus lobata HOM05D000424 ORTHO05D000355 2.0e-24 116.3 130 66.2
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.6e-24 115.9 126 73.8
Atru.chr11.408 Acer truncatum HOM05D000424 ORTHO05D000355 2.2e-23 112.8 122 73.8
Duzib268G1678 Durio zibethinus HOM05D000424 ORTHO05D000355 2.9e-23 112.5 101 55.4
FAN22G0088 Fragaria x ananassa HOM05D000330 ORTHO05D000209 4.9e-23 111.7 127 70.9
FvH4_4g32230 Fragaria vesca HOM05D000424 ORTHO05D000355 8.3e-23 110.9 127 70.9
FAN12G3308 Fragaria x ananassa HOM05D000424 ORTHO05D000355 8.3e-23 110.9 127 70.9
Gohir.D02G145400 Gossypium hirsutum HOM05D000424 ORTHO05D000355 8.3e-23 110.9 60 83.3
Hund20691 Selenicereus undatus HOM05D000424 ORTHO05D000355 5.4e-22 108.2 132 67.4
Lsat_1_v5_gn_4_15340 Lactuca sativa HOM05D000424 ORTHO05D000355 7.0e-22 107.8 123 69.9
Sc04g0005770 Simmondsia chinensis HOM05D000424 ORTHO05D000355 7.0e-22 107.8 170 55.3
Cfa008586 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.6e-21 106.7 132 65.9
HanXRQChr17g0567001 Helianthus annuus HOM05D000424 ORTHO05D000355 2.1e-21 106.3 165 53.9
Prupe.1G322900 Prunus persica HOM05D000424 ORTHO05D000355 2.1e-21 106.3 63 74.6
FAN07G0255 Fragaria x ananassa HOM05D000424 ORTHO05D000355 2.7e-21 105.9 127 69.3
FAN17G1258 Fragaria x ananassa HOM05D000424 ORTHO05D000355 6.0e-21 104.8 124 69.4
Rhsim09G0067800 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.0e-21 104.8 129 71.3
RhsimUnG0084600 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.0e-21 104.8 129 71.3
Gorai.005G162800 Gossypium raimondii HOM05D000424 ORTHO05D000355 7.8e-21 104.4 58 81.0
RcHm_v2.0_Chr4g0440971 Rosa chinensis HOM05D000424 ORTHO05D000355 1.0e-20 104.0 129 67.4
Lj3P875T45 Lonicera japonica HOM05D000424 ORTHO05D000355 2.3e-20 102.8 119 71.4
MD13G1027000 Malus domestica HOM05D000424 ORTHO05D000355 2.3e-20 102.8 122 68.9
Sed0016159 Sechium edule HOM05D000424 ORTHO05D000355 2.3e-20 102.8 123 69.1
Cc07_g19510 Coffea canephora HOM05D000424 ORTHO05D000355 5.1e-20 101.7 121 68.6
DCAR_026767 Daucus carota HOM05D000424 ORTHO05D000355 5.1e-20 101.7 132 65.9
Dinv13001 Davidia involucrata HOM05D000424 ORTHO05D000355 5.1e-20 101.7 121 71.1
vmacro00421 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 6.6e-20 101.3 129 69.8
EL10Ac6g14253 Beta vulgaris HOM05D000424 ORTHO05D000355 2.5e-19 99.4 121 52.1
AUR62039554 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.3e-19 98.6 169 33.1
TPR.G30149 Trifolium pratense HOM05D000424 ORTHO05D000355 4.3e-19 98.6 129 64.3
Lj2g0000352 Lotus japonicus HOM05D000424 ORTHO05D000355 9.5e-19 97.4 132 62.9
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 9.5e-19 97.4 175 33.7
arahy.Tifrunner.gnm1.ann1.P9G8D9 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.6e-18 96.7 123 68.3
arahy.Tifrunner.gnm1.ann1.TA9010 Arachis hypogaea HOM05D000424 ORTHO05D000355 1.6e-18 96.7 124 67.7
AUR62014131 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.6e-18 96.7 169 37.9
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.1e-18 96.3 57 73.7
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 3.6e-18 95.5 173 47.4
ECA234G2733 Erigeron canadensis HOM05D000424 ORTHO05D000355 6.2e-18 94.7 122 63.9
HanXRQChr17g0567011 Helianthus annuus HOM05D000424 ORTHO05D000355 8.1e-18 94.4 125 62.4
Manes.15G126300 Manihot esculenta HOM05D000424 ORTHO05D000355 8.1e-18 94.4 130 61.5
SGA_v2.0_scaffold39G15152 Striga asiatica HOM05D000424 ORTHO05D000355 8.1e-18 94.4 173 48.0
Glyma.10G264500 Glycine max HOM05D000424 ORTHO05D000355 2.3e-17 92.8 133 63.9
Glyma.20G125900 Glycine max HOM05D000424 ORTHO05D000355 2.3e-17 92.8 130 60.8
Psat6g220560 Pisum sativum HOM05D000424 ORTHO05D000355 2.3e-17 92.8 129 62.8
Actinidia31979 Actinidia chinensis HOM05D000520 ORTHO05D006660 5.2e-17 91.7 111 73.9
Nn4g24095 Nelumbo nucifera HOM05D000424 ORTHO05D000355 6.8e-17 91.3 130 63.1
VMungo0720G0382 Vigna mungo HOM05D000424 ORTHO05D000355 1.5e-16 90.1 132 62.9
Lalb_Chr02g0145411 Lupinus albus HOM05D000424 ORTHO05D000355 4.4e-16 88.6 124 67.7
Lalb_Chr02g0145461 Lupinus albus HOM05D000424 ORTHO05D000355 4.4e-16 88.6 124 67.7
PGR119G1028 Punica granatum HOM05D000424 ORTHO05D000355 7.5e-16 87.8 121 65.3
CSS0031805 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 9.9e-16 87.4 132 65.9
CSS0041366 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 9.9e-16 87.4 132 65.9
Thecc.02G279200 Theobroma cacao HOM05D000424 ORTHO05D000355 9.9e-16 87.4 123 65.9
Actinidia33408 Actinidia chinensis HOM05D000424 ORTHO05D000355 1.1e-14 84.0 52 76.9
Ciclev10014876m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.4e-14 83.6 118 66.1
Phvul.007G037500 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.4e-14 83.6 129 62.0
Ca_11091_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.4e-14 82.8 123 64.2
ATR0326G024 Amborella trichopoda HOM05D000424 ORTHO05D000355 3.2e-14 82.4 132 58.3
AL2G30640 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 7.1e-14 81.3 53 69.8
Eucgr.G02199 Eucalyptus grandis HOM05D000424 ORTHO05D000355 7.1e-14 81.3 43 83.7
Oeu022842.1 Olea europaea HOM05D000424 ORTHO05D000355 7.1e-14 81.3 132 59.8
Aqoxy3G03963 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.2e-13 80.5 121 61.2
Cpa.g.sc65.121 Carica papaya HOM05D000424 ORTHO05D000355 1.2e-13 80.5 48 75.0
Migut.E00412 Erythranthe guttata HOM05D000424 ORTHO05D000355 3.5e-13 79.0 173 46.8
CARHR064350 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.0e-12 77.4 43 76.7
PSO135G0044 Papaver somniferum HOM05D000424 ORTHO05D000355 1.0e-12 77.4 124 35.5
BcaB05g24640 Brassica carinata HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
BcaC03g15265 Brassica carinata HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
A02p17130 Brassica napus HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
C02p28580 Brassica napus HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
BolC2t08902H Brassica oleracea HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
BraA02t06760Z Brassica rapa HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
Carub.0002s1787 Capsella rubella HOM05D000424 ORTHO05D000355 1.3e-12 77.0 43 74.4
HanXRQChr17g0566991 Helianthus annuus HOM05D000424 ORTHO05D000355 1.7e-12 76.6 113 61.9
AT1G71060 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 3.0e-12 75.9 40 77.5
Thhalv10000687m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 3.0e-12 75.9 43 72.1
Sp5g26230 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.0e-12 75.9 43 72.1
Thhalv10018364m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 6.6e-12 74.7 40 75.0
COL.COLO4_05687 Corchorus olitorius HOM05D000424 ORTHO05D000355 4.3e-11 72.0 125 32.0
TAR206G0002 Trochodendron aralioides HOM05D000424 ORTHO05D000355 4.3e-11 72.0 43 72.1
COL.COLO4_20460 Corchorus olitorius HOM05D000424 ORTHO05D000355 5.6e-11 71.6 120 37.5
Lj5g0007824 Lotus japonicus HOM05D000424 ORTHO05D000355 5.6e-11 71.6 122 59.0
CDE09G0424 Ceratophyllum demersum HOM05D000069 ORTHO05D000355 9.5e-11 70.9 128 27.3
GSVIVG01011779001 Vitis vinifera HOM05D000424 ORTHO05D000355 9.5e-11 70.9 39 82.1
Sc10g0008050 Simmondsia chinensis HOM05D000424 ORTHO05D000355 1.2e-10 70.5 125 32.0
MD05G1026300 Malus domestica HOM05D000424 ORTHO05D000355 1.6e-10 70.1 125 42.4
Os03g0761300 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 2.8e-10 69.3 126 31.7
Prupe.1G490700 Prunus persica HOM05D000424 ORTHO05D000355 3.6e-10 68.9 125 42.4
DCAR_018877 Daucus carota HOM05D000424 ORTHO05D000355 4.7e-10 68.6 125 54.4
CSS0003198 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 32.0
CSS0012921 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 32.0
CSS0015280 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 32.0
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 57.6
FAN08G2598 Fragaria x ananassa HOM05D000424 ORTHO05D000355 6.2e-10 68.2 122 32.0
Medtr3g088505 Medicago truncatula HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 33.6
RcHm_v2.0_Chr7g0215971 Rosa chinensis HOM05D000424 ORTHO05D000355 6.2e-10 68.2 125 44.8
MBI16_g32951_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 8.1e-10 67.8 51 58.8
Dinv27276 Davidia involucrata HOM05D000424 ORTHO05D000355 1.1e-09 67.4 125 56.0
CAN.G1334.15 Capsicum annuum HOM05D000424 ORTHO05D000355 1.4e-09 67.0 37 78.4
FvH4_5g25662 Fragaria vesca HOM05D000424 ORTHO05D000355 1.4e-09 67.0 124 46.8
Nitab4.5_0003853g0010 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.4e-09 67.0 125 29.6
QL09p032800 Quercus lobata HOM05D000424 ORTHO05D000355 1.4e-09 67.0 125 56.8
Cc00_g02360 Coffea canephora HOM05D000424 ORTHO05D000355 2.4e-09 66.2 125 31.2
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.4e-09 66.2 125 32.0
Haze_11026 Corylus avellana HOM05D000424 ORTHO05D000355 3.1e-09 65.9 132 53.8
arahy.Tifrunner.gnm1.ann1.Q40RKA Arachis hypogaea HOM05D000424 ORTHO05D000355 4.0e-09 65.5 125 52.0
QL09p032747 Quercus lobata HOM05D000424 ORTHO05D000355 4.0e-09 65.5 125 56.8
VMungo1309G1707 Vigna mungo HOM05D000424 ORTHO05D000355 5.2e-09 65.1 126 56.3
Aqoxy3G00841 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 6.8e-09 64.7 127 31.5
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 6.8e-09 64.7 125 28.0
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 8.9e-09 64.3 121 30.6
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 8.9e-09 64.3 121 30.6
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.2e-08 63.9 125 55.2
Medtr1g108270 Medicago truncatula HOM05D000424 ORTHO05D000355 1.2e-08 63.9 119 58.0
Oeu052768.1 Olea europaea HOM05D000424 ORTHO05D000355 1.2e-08 63.9 125 56.0
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.2e-08 63.9 125 56.0
CARHR070840 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.5e-08 63.5 124 57.3
Haze_17998 Corylus avellana HOM05D000054 ORTHO05D002398 1.5e-08 63.5 124 30.6
Glyma.06G116600 Glycine max HOM05D000424 ORTHO05D000355 1.5e-08 63.5 126 54.8
Lj1g0004385 Lotus japonicus HOM05D000424 ORTHO05D000355 1.5e-08 63.5 126 28.6
Phvul.009G129200 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.5e-08 63.5 126 55.6
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 1.5e-08 63.5 109 31.2
Psat5g085120 Pisum sativum HOM05D000424 ORTHO05D000355 2.0e-08 63.2 125 54.4
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 2.6e-08 62.8 123 56.1
Ca_16602_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.6e-08 62.8 124 29.0
Sopen11g028720 Solanum pennellii HOM05D000424 ORTHO05D000355 2.6e-08 62.8 125 28.8
PGSC0003DMG400025520 Solanum tuberosum HOM05D000424 ORTHO05D000355 2.6e-08 62.8 125 28.8
TPR.G13478 Trifolium pratense HOM05D000424 ORTHO05D000355 2.6e-08 62.8 125 53.6
Carub.0002s2424 Capsella rubella HOM05D000424 ORTHO05D000355 3.4e-08 62.4 125 56.8
Manes.18G081800 Manihot esculenta HOM05D000424 ORTHO05D000355 3.4e-08 62.4 127 53.5
Peaxi162Scf00247g00063 Petunia axillaris HOM05D000424 ORTHO05D000355 3.4e-08 62.4 125 28.0
Solyc11g070040.3 Solanum lycopersicum HOM05D000424 ORTHO05D000355 4.4e-08 62.0 125 28.0
THA.LOC104810235 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.4e-08 62.0 125 56.0
Aa31LG4G7380 Aethionema arabicum HOM05D000424 ORTHO05D000355 7.6e-08 61.2 125 56.8
Migut.J01750 Erythranthe guttata HOM05D000424 ORTHO05D000355 7.6e-08 61.2 125 56.0
Lalb_Chr11g0066161 Lupinus albus HOM05D000424 ORTHO05D000355 9.9e-08 60.8 126 53.2
Sp5g32520 Schrenkiella parvula HOM05D000424 ORTHO05D000355 9.9e-08 60.8 124 56.5
THA.LOC104822166 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 9.9e-08 60.8 108 61.1
ECA246G4611 Erigeron canadensis HOM05D000424 ORTHO05D000355 1.3e-07 60.5 125 30.4
Potri.005G181900 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.7e-07 60.1 109 58.7
THA.LOC104800234 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 1.7e-07 60.1 125 55.2
Thhalv10018469m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.9e-07 59.3 124 55.6
HanXRQChr05g0149191 Helianthus annuus HOM05D000424 ORTHO05D000355 2.9e-07 59.3 127 28.3
Sabra05G0137900 Salix brachista HOM05D000424 ORTHO05D000355 3.8e-07 58.9 118 56.8
C02p34500 Brassica napus HOM05D000424 ORTHO05D000355 4.9e-07 58.5 124 55.6
Nn7g37559 Nelumbo nucifera HOM05D000424 ORTHO05D000355 4.9e-07 58.5 124 54.0
Nitab4.5_0000661g0080 Nicotiana tabacum HOM05D000424 ORTHO05D000355 4.9e-07 58.5 125 52.8
Ah.08g210650 Amaranthus hybridus HOM05D002007 ORTHO05D000355 6.4e-07 58.2 126 55.6
MSTRG.6423 Avicennia marina HOM05D000424 ORTHO05D000355 6.4e-07 58.2 125 53.6
CAN.G309.56 Capsicum annuum HOM05D000424 ORTHO05D000355 6.4e-07 58.2 119 28.6
CiPaw.16G024200 Carya illinoinensis HOM05D000424 ORTHO05D000355 6.4e-07 58.2 59 42.4
PSO541G2416 Papaver somniferum HOM05D000424 ORTHO05D000355 6.4e-07 58.2 129 51.9
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 6.4e-07 58.2 109 56.9
MBI18_g10377_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 8.4e-07 57.8 120 30.0
AL2G37560 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 1.1e-06 57.4 124 55.6
BcaC03g15732 Brassica carinata HOM05D000424 ORTHO05D000355 1.1e-06 57.4 124 55.6
BolC2t09480H Brassica oleracea HOM05D000424 ORTHO05D000355 1.1e-06 57.4 124 55.6
BraA02t07142Z Brassica rapa HOM05D000424 ORTHO05D000355 1.1e-06 57.4 124 55.6
PSO675G6117 Papaver somniferum HOM05D000424 ORTHO05D000355 1.1e-06 57.4 125 52.8
SGA_v2.0_scaffold105G30402 Striga asiatica HOM05D000424 ORTHO05D000355 1.1e-06 57.4 123 53.7
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 1.4e-06 57.0 59 40.7
FAN04G0992 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.4e-06 57.0 59 42.4
Lsat_1_v5_gn_6_109101 Lactuca sativa HOM05D000424 ORTHO05D000355 3.2e-06 55.8 109 29.4
EL10Ac7g16936 Beta vulgaris HOM05D000424 ORTHO05D000355 5.4e-06 55.1 126 53.2
ATR0605G098 Amborella trichopoda HOM05D000424 ORTHO05D000355 7.1e-06 54.7 109 28.4
AT1G77360 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 7.1e-06 54.7 124 54.0
Ciclev10000990m.g Citrus clementina HOM05D000424 ORTHO05D000355 7.1e-06 54.7 109 28.4


User provided reference genes

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