Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 5.9e-121 437.6 225 100.0
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 2.8e-94 349.0 225 80.0
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.4e-93 346.7 222 80.2
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.7e-91 339.7 225 76.9
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.9e-71 273.1 222 66.7
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.1e-63 247.3 206 65.5
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 3.4e-60 235.7 223 59.2
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 7.1e-58 228.0 225 52.0
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.1e-55 220.7 222 53.2
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.9e-55 219.9 221 49.8
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 5.6e-55 218.4 224 50.9
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 5.6e-55 218.4 224 50.9
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 8.1e-54 214.5 221 52.5
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.4e-53 213.8 219 50.7
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 2.4e-53 213.0 220 50.5
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.1e-53 212.6 224 49.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.0e-53 212.2 222 49.5
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 5.3e-53 211.8 218 51.4
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.9e-53 211.5 222 49.5
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.0e-52 209.9 224 50.0
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 3.4e-52 209.1 221 51.6
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.4e-52 209.1 234 49.6
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 5.8e-52 208.4 222 50.5
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 9.9e-52 207.6 221 49.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.2e-51 206.5 222 50.0
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.9e-51 206.1 221 49.3
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 6.4e-51 204.9 230 49.6
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 8.4e-51 204.5 221 49.8
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.4e-50 203.8 224 47.3
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 2.4e-50 203.0 220 47.7
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.2e-49 200.7 225 47.6
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 7.9e-49 198.0 206 52.9
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 7.9e-49 198.0 227 46.3
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.9e-48 195.7 235 44.7
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 6.7e-48 194.9 217 47.9
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.5e-47 193.0 220 46.8
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 7.4e-47 191.4 222 45.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 7.4e-47 191.4 222 48.2
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.4e-47 191.4 220 44.5
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 3.7e-46 189.1 223 43.9
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.4e-45 187.2 222 48.2
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.4e-45 187.2 226 44.7
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 5.3e-45 185.3 223 46.6
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 9.0e-45 184.5 221 45.2
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.6e-44 183.0 222 43.7
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 5.8e-44 181.8 223 45.7
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.3e-43 180.6 233 42.9
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 1.7e-43 180.3 211 49.8
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.2e-43 179.9 249 41.4
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.2e-43 179.9 228 43.0
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 2.9e-43 179.5 223 45.7
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 4.9e-43 178.7 227 43.2
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.9e-43 178.7 232 42.7
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.4e-42 177.2 222 45.0
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.5e-42 176.4 216 40.3
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 4.2e-42 175.6 225 42.7
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 7.1e-42 174.9 221 42.1
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 9.3e-42 174.5 223 42.6
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.6e-41 173.7 221 43.0
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.6e-41 173.7 218 45.4
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 2.1e-41 173.3 222 41.4
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 2.1e-41 173.3 220 41.8
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.1e-41 173.3 222 41.4
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.1e-41 173.3 222 41.4
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 2.1e-41 173.3 220 41.8
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.1e-41 173.3 222 44.1
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.5e-41 172.6 220 42.3
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 4.6e-41 172.2 220 43.2
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 6.0e-41 171.8 222 44.1
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 7.9e-41 171.4 220 40.0
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.3e-40 170.6 226 39.8
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.8e-40 170.2 214 43.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.8e-40 170.2 229 42.8
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 3.9e-40 169.1 226 42.0
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 5.1e-40 168.7 182 48.9
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.7e-40 168.3 222 42.3
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.1e-39 167.5 226 42.5
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.1e-39 167.5 235 42.1
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.3e-39 165.6 222 38.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 5.7e-39 165.2 220 39.1
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.3e-38 164.1 213 46.5
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.8e-37 160.2 212 41.0
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 6.9e-37 158.3 207 42.5
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 2.0e-36 156.8 212 43.4
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.0e-36 156.8 259 38.2
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.5e-36 155.6 208 45.7
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.6e-36 154.8 227 37.0
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 1.0e-35 154.5 240 36.2
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.3e-35 154.1 216 39.8
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.9e-35 152.9 240 39.6
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 3.8e-35 152.5 207 41.1
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 8.4e-35 151.4 271 36.2
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.1e-34 151.0 222 38.3
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.1e-34 151.0 222 37.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.4e-34 150.6 237 36.3
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.9e-34 150.2 215 41.4
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.5e-34 149.8 205 43.4
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 2.5e-34 149.8 224 39.7
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.2e-33 147.5 221 38.5
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.6e-33 147.1 180 42.2
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 4.6e-33 145.6 241 37.8
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 7.9e-33 144.8 205 39.0
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.0e-32 144.4 206 40.3
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.0e-32 144.4 217 38.2
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 5.1e-32 142.1 215 38.1
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.3e-31 139.4 206 38.3
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 4.3e-31 139.0 120 55.8
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 9.7e-31 137.9 240 35.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.3e-30 137.5 221 35.3
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 3.7e-30 136.0 85 75.3
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.3e-30 135.2 220 34.1
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-29 134.4 180 43.3
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.3e-29 132.1 218 35.8
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.3e-29 132.1 218 35.8
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.2e-28 131.0 208 37.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.2e-28 131.0 208 37.5
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 4.5e-28 129.0 228 37.7
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.0e-27 125.6 222 36.5
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 6.5e-27 125.2 206 37.4
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.1e-26 124.4 121 47.9
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.7e-25 119.8 182 37.4
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 6.1e-25 118.6 138 51.4
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.4e-24 117.5 210 33.8
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.8e-24 117.1 222 37.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.1e-21 107.8 210 32.9
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 7.7e-20 101.7 82 56.1
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 1.7e-19 100.5 170 35.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 5.0e-19 99.0 228 27.6
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.1e-18 97.8 140 42.9
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.0e-16 91.3 108 42.6
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.5e-15 87.4 81 51.9
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.4e-15 85.9 65 64.6
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.7e-15 85.5 65 66.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.3e-14 84.3 118 40.7
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 1.4e-13 80.9 101 42.6
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.8e-13 80.5 181 29.3
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 7.7e-12 75.1 57 66.7
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 7.7e-12 75.1 57 66.7
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.2e-11 73.6 64 56.2
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.2e-10 69.3 124 33.1
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.6e-09 67.4 129 38.8
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.8e-08 63.9 74 52.7
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.0e-08 62.8 179 29.6
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.3e-06 57.8 83 34.9


User provided reference genes

Program Settings