Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1830.2 Capsicum annuum HOM05D005432 ORTHO05D004599 2.7e-105 386.0 293 100.0
PGSC0003DMG400002732 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.4e-58 230.7 303 51.5
Solyc09g008760.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.6e-57 227.3 307 51.5
PGSC0003DMG400012977 Solanum tuberosum HOM05D005432 ORTHO05D004599 6.9e-53 211.8 299 49.5
PGSC0003DMG400012978 Solanum tuberosum HOM05D005432 ORTHO05D004599 3.4e-52 209.5 250 52.8
Peaxi162Scf00500g00034 Petunia axillaris HOM05D005432 ORTHO05D004599 1.4e-50 204.1 310 50.3
Nitab4.5_0008385g0020 Nicotiana tabacum HOM05D005432 ORTHO05D004599 4.2e-50 202.6 268 48.9
Solyc09g008750.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.0e-48 198.0 296 50.0
Solyc09g008740.1 Solanum lycopersicum HOM05D005432 ORTHO05D004599 3.0e-48 196.4 253 51.8
Nitab4.5_0000680g0130 Nicotiana tabacum HOM05D005432 ORTHO05D004599 6.6e-48 195.3 267 51.3
Nitab4.5_0008385g0010 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.9e-47 193.7 291 46.7
Sopen09g003530 Solanum pennellii HOM05D005432 ORTHO05D004599 6.2e-46 188.7 253 52.2
Sopen09g003550 Solanum pennellii HOM05D005432 ORTHO05D004599 2.2e-43 180.3 260 50.0
CAN.G1830.1 Capsicum annuum HOM05D005432 ORTHO05D004599 3.8e-43 179.5 253 47.8
Nitab4.5_0000680g0150 Nicotiana tabacum HOM05D005432 ORTHO05D004599 1.6e-41 174.1 249 49.0
CAN.G1830.3 Capsicum annuum HOM05D005432 ORTHO05D004599 1.0e-40 171.4 250 51.6
Sopen09g003540 Solanum pennellii HOM05D005432 ORTHO05D004599 2.5e-39 166.8 253 49.4
Peaxi162Scf00449g00414 Petunia axillaris HOM05D005432 ORTHO05D004599 4.3e-23 112.8 260 37.3
CAN.G775.5 Capsicum annuum HOM05D005432 ORTHO05D004599 6.5e-19 99.0 254 35.8
PGSC0003DMG400003320 Solanum tuberosum HOM05D005432 ORTHO05D004599 1.4e-18 97.8 263 30.8
Sopen02g014700 Solanum pennellii HOM05D005432 ORTHO05D004599 7.9e-17 92.0 270 33.0
Solyc02g064570.2 Solanum lycopersicum HOM05D005432 ORTHO05D004599 1.3e-14 84.7 273 31.9
DCAR_010807 Daucus carota HOM05D005432 ORTHO05D004599 7.2e-10 68.9 57 61.4
Cc07_g07280 Coffea canephora HOM05D005432 ORTHO05D004599 4.7e-09 66.2 57 68.4
MD02G1188600 Malus domestica HOM05D005432 ORTHO05D004599 1.0e-08 65.1 55 54.5
Gohir.A12G078000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.3e-08 63.9 59 54.2
Gohir.D12G076200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.3e-08 63.9 59 54.2
Gorai.008G084600 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.3e-08 63.9 59 54.2
FAN23G2070 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.0e-08 63.5 57 49.1
FvH4_1g18020 Fragaria vesca HOM05D005432 ORTHO05D004599 3.9e-08 63.2 57 47.4
FAN19G1119 Fragaria x ananassa HOM05D005432 ORTHO05D004599 3.9e-08 63.2 57 47.4
BcaC01g00392 Brassica carinata HOM05D009364 ORTHO05D004599 6.7e-08 62.4 59 50.8
C03p79220 Brassica napus HOM05D009364 ORTHO05D004599 6.7e-08 62.4 59 50.8
BolC3t20164H Brassica oleracea HOM05D009364 ORTHO05D004599 6.7e-08 62.4 59 50.8
BraA08t34242Z Brassica rapa HOM05D009364 ORTHO05D004599 6.7e-08 62.4 59 50.8
A03p65490 Brassica napus HOM05D009364 ORTHO05D004599 8.8e-08 62.0 63 49.2
BraA03t15601Z Brassica rapa HOM05D009364 ORTHO05D004599 8.8e-08 62.0 63 49.2
Carub.0004s0201 Capsella rubella HOM05D009364 ORTHO05D004599 8.8e-08 62.0 58 50.0
FAN26G1008 Fragaria x ananassa HOM05D005432 ORTHO05D004599 8.8e-08 62.0 57 49.1
Thecc.01G075000 Theobroma cacao HOM05D005432 ORTHO05D004599 8.8e-08 62.0 83 41.0
BcaB03g12334 Brassica carinata HOM05D009364 ORTHO05D004599 1.1e-07 61.6 60 48.3
A08p22730 Brassica napus HOM05D009364 ORTHO05D004599 1.1e-07 61.6 59 50.8
Dinv23035 Davidia involucrata HOM05D005432 ORTHO05D004599 1.1e-07 61.6 52 57.7
Rhsim10G0095100 Rhododendron simsii HOM05D005432 ORTHO05D004599 1.5e-07 61.2 54 57.4
CARHR114200 Cardamine hirsuta HOM05D009364 ORTHO05D004599 2.0e-07 60.8 54 51.9
Gohir.D11G210200 Gossypium hirsutum HOM05D005432 ORTHO05D004599 2.0e-07 60.8 57 50.9
Gorai.007G225500 Gossypium raimondii HOM05D005432 ORTHO05D004599 2.0e-07 60.8 57 50.9
CANSAT01G2351 Cannabis sativa HOM05D005432 ORTHO05D004599 2.6e-07 60.5 79 45.6
AL4G12470 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 3.3e-07 60.1 54 51.9
BcaNung02084 Brassica carinata HOM05D009364 ORTHO05D004599 3.3e-07 60.1 63 47.6
Duzib147G0737 Durio zibethinus HOM05D005432 ORTHO05D004599 3.3e-07 60.1 58 51.7
Rhsim10G0095000 Rhododendron simsii HOM05D005432 ORTHO05D004599 3.3e-07 60.1 58 53.4
SalBow5G2133 Salvia bowleyana HOM05D005432 ORTHO05D004599 3.3e-07 60.1 270 25.9
Duzib264G0647 Durio zibethinus HOM05D005432 ORTHO05D004599 4.4e-07 59.7 83 41.0
Gohir.A11G213000 Gossypium hirsutum HOM05D005432 ORTHO05D004599 4.4e-07 59.7 57 49.1
Lsat_1_v5_gn_4_160241 Lactuca sativa HOM05D005432 ORTHO05D004599 4.4e-07 59.7 87 41.4
Carub.0007s0254 Capsella rubella HOM05D009364 ORTHO05D004599 5.7e-07 59.3 55 50.9
FAN28G2020 Fragaria x ananassa HOM05D005432 ORTHO05D004599 5.7e-07 59.3 56 46.4
QL06p039087 Quercus lobata HOM05D005432 ORTHO05D004599 5.7e-07 59.3 54 51.9
RcHm_v2.0_Chr2g0108511 Rosa chinensis HOM05D005432 ORTHO05D004599 5.7e-07 59.3 55 47.3
Actinidia11967 Actinidia chinensis HOM05D005432 ORTHO05D004599 9.7e-07 58.5 56 51.8
AL3G48200 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 9.7e-07 58.5 54 50.0
BcaC07g41018 Brassica carinata HOM05D009364 ORTHO05D004599 9.7e-07 58.5 52 50.0
A09p57200 Brassica napus HOM05D009364 ORTHO05D004599 9.7e-07 58.5 52 50.0
C08p40200 Brassica napus HOM05D009364 ORTHO05D004599 9.7e-07 58.5 52 50.0
BolC8t51591H Brassica oleracea HOM05D009364 ORTHO05D004599 9.7e-07 58.5 52 50.0
BraA09t41113Z Brassica rapa HOM05D009364 ORTHO05D004599 9.7e-07 58.5 52 50.0
Duzib187G0823 Durio zibethinus HOM05D005432 ORTHO05D004599 9.7e-07 58.5 57 54.4
ECA232G3846 Erigeron canadensis HOM05D005432 ORTHO05D004599 9.7e-07 58.5 57 50.9
Oeu011980.1 Olea europaea HOM05D005432 ORTHO05D004599 9.7e-07 58.5 267 30.3
Sabra14G0006100 Salix brachista HOM05D005432 ORTHO05D004599 9.7e-07 58.5 52 51.9
BcaC06g33374 Brassica carinata HOM05D009364 ORTHO05D004599 1.3e-06 58.2 63 47.6
C07p62590 Brassica napus HOM05D009364 ORTHO05D004599 1.3e-06 58.2 63 47.6
BolC7t46674H Brassica oleracea HOM05D009364 ORTHO05D004599 1.3e-06 58.2 63 47.6
Ca_22097_v3 Cicer arietinum L. HOM05D005432 ORTHO05D004599 1.3e-06 58.2 53 50.9
Lj4g0003965 Lotus japonicus HOM05D005432 ORTHO05D004599 1.3e-06 58.2 53 54.7
AL7G12970 Arabidopsis lyrata HOM05D009364 ORTHO05D004599 1.7e-06 57.8 62 48.4
Prupe.6G218300 Prunus persica HOM05D005432 ORTHO05D004599 1.7e-06 57.8 56 48.2
AT2G22880 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 2.2e-06 57.4 54 50.0
Potri.014G006400 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.2e-06 57.4 52 50.0
Sp4g01930 Schrenkiella parvula HOM05D009364 ORTHO05D004599 2.2e-06 57.4 55 47.3
TPR.G24237 Trifolium pratense HOM05D005432 ORTHO05D004599 2.2e-06 57.4 52 55.8
VMungo0251G2573 Vigna mungo HOM05D005432 ORTHO05D004599 2.2e-06 57.4 56 50.0
Lsat_1_v5_gn_4_160361 Lactuca sativa HOM05D005432 ORTHO05D004599 2.8e-06 57.0 55 52.7
Potri.007G006200 Populus trichocarpa HOM05D005432 ORTHO05D004599 2.8e-06 57.0 52 51.9
TWI77G0559 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 3.7e-06 56.6 53 49.1
Eucgr.H02318 Eucalyptus grandis HOM05D005432 ORTHO05D004599 4.8e-06 56.2 66 45.5
Sabra07G0004500 Salix brachista HOM05D005432 ORTHO05D004599 4.8e-06 56.2 52 51.9
Sp7g35360 Schrenkiella parvula HOM05D009364 ORTHO05D004599 4.8e-06 56.2 60 48.3
Eucgr.H02317 Eucalyptus grandis HOM05D005432 ORTHO05D004599 6.3e-06 55.8 61 49.2
SGA_v2.0_scaffold15G07481 Striga asiatica HOM05D005432 ORTHO05D004599 6.3e-06 55.8 57 49.1
TWI74G0597 Tripterygium wilfordii HOM05D005432 ORTHO05D004599 6.3e-06 55.8 50 54.0
AT4G37710 Arabidopsis thaliana HOM05D009364 ORTHO05D004599 8.2e-06 55.5 57 49.1
Glyma.05G107500 Glycine max HOM05D005432 ORTHO05D004599 8.2e-06 55.5 57 45.6
TAR376G0425 Trochodendron aralioides HOM05D005432 ORTHO05D004599 8.2e-06 55.5 79 46.8
VMungo1215G3148 Vigna mungo HOM05D005432 ORTHO05D004599 8.2e-06 55.5 57 43.9


User provided reference genes

Program Settings