Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.7e-191 672.5 342 100.0
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.5e-168 596.3 342 90.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 1.5e-168 596.3 345 90.1
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 4.4e-168 594.7 345 90.1
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.3e-163 578.2 343 87.5
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.5e-144 516.5 351 79.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 9.9e-144 513.8 351 77.5
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.2e-141 506.9 350 76.0
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 3.5e-141 505.4 352 74.7
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 1.0e-140 503.8 341 76.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.9e-140 501.9 353 74.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.9e-140 501.9 353 74.5
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.6e-140 500.7 330 77.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.3e-139 498.8 327 76.8
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.3e-139 498.8 330 77.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 4.3e-139 498.4 326 78.5
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 5.6e-139 498.0 344 76.2
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 1.2e-138 496.9 329 77.2
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 1.6e-138 496.5 327 76.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 1.6e-138 496.5 326 76.4
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.6e-138 496.5 326 76.4
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.8e-138 495.7 340 76.8
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 4.7e-138 495.0 326 76.7
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 6.2e-138 494.6 344 75.0
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 8.1e-138 494.2 329 76.9
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.1e-137 493.8 332 76.2
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 1.4e-137 493.4 326 76.1
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 1.4e-137 493.4 311 78.8
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 1.8e-137 493.0 326 76.1
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.4e-137 492.7 326 75.8
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.4e-137 492.7 327 76.1
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 2.4e-137 492.7 326 76.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 4.0e-137 491.9 344 74.1
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 5.2e-137 491.5 327 76.1
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 8.9e-137 490.7 346 75.1
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.0e-136 489.6 326 75.5
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.6e-136 489.2 349 73.9
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.9e-136 487.3 340 73.2
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.3e-135 486.9 340 74.7
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-135 486.5 340 72.9
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 3.8e-135 485.3 330 75.5
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.8e-135 485.3 354 73.2
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 4.9e-135 485.0 326 75.2
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.9e-135 485.0 327 75.5
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 8.4e-135 484.2 331 75.2
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 8.4e-135 484.2 329 74.2
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.1e-134 483.8 340 73.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 1.9e-134 483.0 331 73.4
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 2.4e-134 482.6 331 74.3
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 2.4e-134 482.6 345 73.0
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 3.2e-134 482.3 323 76.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 4.1e-134 481.9 323 78.3
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.1e-134 481.9 345 73.0
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 4.1e-134 481.9 349 72.8
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 5.4e-134 481.5 331 74.3
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 7.1e-134 481.1 331 74.6
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 7.1e-134 481.1 351 72.9
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.2e-133 480.3 331 74.0
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 1.2e-133 480.3 358 71.5
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.1e-133 479.6 328 74.4
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.1e-133 479.6 304 78.3
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 3.5e-133 478.8 342 72.8
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 4.6e-133 478.4 348 71.0
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 4.6e-133 478.4 319 76.2
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 6.0e-133 478.0 326 74.2
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.3e-132 476.9 331 74.6
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.3e-132 476.9 305 78.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.3e-132 476.1 327 75.2
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-132 476.1 332 72.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.3e-132 476.1 330 73.3
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.0e-132 475.7 330 73.6
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 5.1e-132 474.9 339 73.5
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 6.6e-132 474.6 347 72.9
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.6e-132 474.6 342 72.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 6.6e-132 474.6 359 70.2
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 5.6e-131 471.5 330 73.3
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.2e-130 470.3 339 73.5
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 3.6e-130 468.8 302 78.1
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 8.1e-130 467.6 406 63.5
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 8.1e-130 467.6 292 79.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.1e-129 467.2 338 72.8
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 3.1e-129 465.7 382 64.1
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.2e-129 464.9 337 72.1
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.0e-129 464.2 350 69.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.2e-128 463.8 321 72.3
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.6e-128 461.1 331 71.3
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 9.9e-128 460.7 311 74.6
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 4.9e-127 458.4 308 74.7
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.1e-126 457.2 340 70.6
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 7.1e-126 454.5 310 75.2
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 7.1e-126 454.5 319 74.6
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 2.1e-125 453.0 307 75.6
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.3e-124 450.3 284 77.8
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.3e-123 445.7 330 70.3
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 7.3e-123 444.5 270 82.2
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 9.6e-123 444.1 285 76.1
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.3e-122 443.7 340 69.4
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.0e-121 437.6 344 68.3
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 1.5e-120 436.8 359 64.6
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.9e-119 431.8 367 67.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.4e-118 430.3 272 77.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 1.9e-118 429.9 338 67.2
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 2.7e-117 426.0 325 68.9
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.9e-116 422.2 329 68.4
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 5.6e-115 418.3 270 77.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 2.1e-114 416.4 307 72.0
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 3.7e-114 415.6 299 74.9
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 8.1e-114 414.5 281 75.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 3.1e-113 412.5 325 69.2
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 5.8e-112 408.3 298 67.1
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.2e-111 406.4 292 71.6
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.8e-111 405.6 264 76.9
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 5.6e-107 391.7 282 67.4
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.8e-105 386.7 268 72.8
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 7.6e-104 381.3 270 71.5
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.8e-103 379.0 287 67.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.5e-101 372.5 278 70.5
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 4.3e-99 365.5 272 66.2
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 4.6e-93 345.5 309 60.2
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.0e-87 327.8 231 74.9
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.7e-87 327.0 222 77.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 3.2e-86 322.8 228 73.2
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 8.8e-68 261.5 154 87.7
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 1.1e-65 254.6 350 47.4
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 8.8e-60 235.0 139 82.0
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.1e-57 226.5 186 67.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.3e-50 204.5 153 66.0
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 9.2e-49 198.4 139 71.2
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 1.5e-43 181.0 133 66.9
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-37 161.4 109 70.6
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.6e-37 161.0 108 71.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.2e-32 144.8 275 38.9
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 1.9e-30 137.5 112 58.9
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.2e-29 134.8 307 30.0
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 4.0e-28 129.8 163 48.5
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 9.9e-27 125.2 112 58.0
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.9e-23 113.2 119 49.6
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.5e-22 111.3 87 59.8
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.1e-20 103.6 71 69.0
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 9.9e-19 98.6 91 59.3
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 9.9e-19 98.6 55 76.4
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 9.9e-19 98.6 53 90.6
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 1.3e-18 98.2 93 60.2
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 1.7e-18 97.8 63 71.4
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 8.4e-18 95.5 52 86.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 9.2e-17 92.0 61 70.5
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 6.0e-16 89.4 208 33.7
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 6.0e-16 89.4 81 51.9
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 4.9e-10 69.7 37 78.4
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.7e-07 61.2 58 60.3
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 1.1e-06 58.5 31 87.1
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 4.3e-06 56.6 50 58.0


User provided reference genes

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