Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 5.4e-139 497.7 255 100.0
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 3.8e-92 342.0 209 86.6
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 1.9e-91 339.7 189 91.5
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 4.7e-90 335.1 189 89.4
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 2.6e-88 329.3 189 87.8
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 7.0e-86 321.2 213 79.3
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 6.8e-81 304.7 188 81.9
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 4.4e-80 302.0 189 81.5
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 1.4e-70 270.4 198 70.2
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 3.2e-70 269.2 179 75.4
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 3.2e-70 269.2 199 70.4
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.5e-69 265.8 185 70.3
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 6.6e-68 261.5 187 69.5
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 6.6e-68 261.5 182 70.9
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 3.3e-67 259.2 167 76.6
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 7.3e-67 258.1 185 70.3
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 7.3e-67 258.1 177 70.1
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 2.1e-66 256.5 175 72.0
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 6.1e-66 255.0 187 67.9
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 8.0e-66 254.6 194 66.5
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.0e-65 254.2 183 72.7
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 3.1e-65 252.7 167 74.3
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 4.0e-65 252.3 193 67.9
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 5.2e-65 251.9 194 64.4
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 6.8e-65 251.5 183 68.3
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 1.5e-64 250.4 193 67.4
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 1.5e-64 250.4 180 69.4
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 1.3e-63 247.3 204 62.7
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 2.2e-63 246.5 180 67.8
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 6.4e-63 245.0 202 66.3
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 6.4e-63 245.0 169 69.8
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 1.1e-62 244.2 190 68.9
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 1.1e-62 244.2 174 70.1
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 3.2e-62 242.7 174 70.1
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 4.1e-62 242.3 171 70.8
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 4.1e-62 242.3 174 70.1
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 5.4e-62 241.9 195 66.7
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 9.2e-62 241.1 196 62.8
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.2e-61 240.7 209 61.2
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 1.2e-61 240.7 187 66.3
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 2.7e-61 239.6 189 63.0
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 7.8e-61 238.0 180 67.8
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 1.3e-60 237.3 189 66.7
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.3e-60 237.3 234 56.4
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 1.7e-60 236.9 201 63.7
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.3e-60 236.5 197 62.9
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 2.3e-60 236.5 198 62.1
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 3.0e-60 236.1 187 64.2
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 3.0e-60 236.1 183 65.6
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 3.9e-60 235.7 176 69.9
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 5.0e-60 235.3 196 63.3
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.1e-59 234.2 197 62.4
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.5e-59 233.8 199 61.8
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 4.3e-59 232.3 165 67.9
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 9.5e-59 231.1 183 62.3
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.6e-58 230.3 220 55.0
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 1.1e-57 227.6 194 62.4
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.1e-57 227.6 197 59.9
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.8e-57 226.9 183 63.9
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 5.2e-57 225.3 195 62.6
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 1.5e-56 223.8 166 64.5
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 1.5e-56 223.8 184 60.9
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 2.0e-56 223.4 201 59.2
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 3.4e-56 222.6 181 61.9
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 2.2e-55 219.9 179 61.5
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 2.2e-55 219.9 159 67.3
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 1.9e-54 216.9 117 91.5
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.2e-53 214.2 179 60.9
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 1.2e-53 214.2 192 58.9
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 2.7e-53 213.0 203 56.2
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.7e-52 210.3 179 59.8
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 2.3e-52 209.9 199 56.8
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 3.0e-52 209.5 170 65.3
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 5.1e-52 208.8 191 58.1
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 3.3e-51 206.1 181 58.0
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 3.3e-51 206.1 175 60.6
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 2.8e-50 203.0 184 58.2
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 1.4e-49 200.7 169 60.9
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.2e-48 197.6 182 54.4
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 3.4e-48 196.1 192 56.8
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 5.8e-48 195.3 185 57.3
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 3.2e-46 189.5 167 58.1
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 1.2e-45 187.6 167 59.3
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 3.5e-45 186.0 163 58.9
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 4.6e-45 185.7 175 53.7
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 1.3e-44 184.1 167 59.3
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 3.0e-44 183.0 167 58.7
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 6.6e-44 181.8 167 58.1
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 1.1e-43 181.0 184 57.1
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 2.5e-43 179.9 167 57.5
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 7.3e-43 178.3 167 57.5
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 7.3e-43 178.3 167 57.5
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.2e-42 177.6 167 56.9
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 2.8e-42 176.4 167 56.3
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 2.8e-42 176.4 167 56.9
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 2.8e-42 176.4 181 54.7
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 4.7e-42 175.6 173 53.2
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 6.2e-42 175.3 184 55.4
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 6.2e-42 175.3 184 55.4
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 6.8e-41 171.8 168 56.0
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 1.5e-40 170.6 179 52.0
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 1.5e-40 170.6 168 55.4
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.5e-40 170.6 167 53.9
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 4.9e-39 165.6 158 54.4
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 3.5e-37 159.5 168 54.2
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 1.4e-33 147.5 109 69.7
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 2.6e-32 143.3 183 43.2
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 7.6e-32 141.7 124 60.5
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.2e-31 140.2 191 45.5
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 3.9e-28 129.4 103 62.1
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.3e-23 114.4 171 45.0
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 3.9e-20 102.8 181 36.5
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.5e-19 100.9 96 57.3
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 4.8e-18 95.9 188 34.0
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 3.9e-12 76.3 128 35.9
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.9e-06 57.4 39 66.7
SMO337G0092 Selaginella moellendorffii HOM05D006799 ORTHO05D008391 3.2e-06 56.6 206 27.7


User provided reference genes

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